View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_40 (Length: 236)
Name: NF16748_low_40
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_40 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46225187 - 46224965
Alignment:
| Q |
1 |
ttaaattaaacaaacaagtggaacacttccataattttaagagaacacctaaattttaaaagcagagaacaactgaacttctataattttaagaacacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
46225187 |
ttaaattaaacaaacaagtggaacacttccataattttaagagaacacctaaattttacaagcagagaacaactgaacttctataattttaagaacaaag |
46225088 |
T |
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| Q |
101 |
tcatatattcagagatgcataatcaaataactcacaaatacacattgtcaaataattaatctttatacaatcacttggaaaagaagtatattattttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46225087 |
tcatatattcagagatgcataatcaaataactcacaaatacacattgtcaaataattaatctttatacaatcacttggaaaagaagtatattattttgag |
46224988 |
T |
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| Q |
201 |
cacggttcttcaatgatcattat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
46224987 |
cacggttcttcaatgatcattat |
46224965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26013668 - 26013744
Alignment:
| Q |
1 |
ttaaattaaacaaacaagtggaacacttccataattttaagagaacacctaaattttaaaagcagagaacaactgaa |
77 |
Q |
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|||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
26013668 |
ttaaatcaaacaaacaagtggatcacttctataattttaagagaacacctaaattttacaagcagagaacacctgaa |
26013744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 14981371 - 14981261
Alignment:
| Q |
1 |
ttaaattaaacaaacaagtggaacacttccataattttaagagaacacctaaattttaaaagcagagaacaactgaacttctataattttaagaacacag |
100 |
Q |
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|||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
14981371 |
ttaaatcaaacaaacaagtggatcacttctataattttaagagaacacctaaattttacaagcagagaacacctgaacttctataattttaagaacacaa |
14981272 |
T |
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| Q |
101 |
tcatatattca |
111 |
Q |
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||||||||||| |
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| T |
14981271 |
tcatatattca |
14981261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 15410847 - 15410737
Alignment:
| Q |
1 |
ttaaattaaacaaacaagtggaacacttccataattttaagagaacacctaaattttaaaagcagagaacaactgaacttctataattttaagaacacag |
100 |
Q |
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|||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
15410847 |
ttaaatcaaacaaacaagtggatcacttctataattttaagagaacacctaaattttacaagcagagaacacctgaacttctataattttaagaacacaa |
15410748 |
T |
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| Q |
101 |
tcatatattca |
111 |
Q |
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||||||||||| |
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| T |
15410747 |
tcatatattca |
15410737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 19595 - 19703
Alignment:
| Q |
1 |
ttaaattaaacaaacaagtggaacacttccataattttaagagaacacctaaattttaaaagcagagaacaactgaacttctataattttaagaacacag |
100 |
Q |
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|||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
19595 |
ttaaatcaaacaaacaaatggatcacttctataattttaagagaacacctaaattttacaagcagagaacacctgaacttctataattttaagaacacaa |
19694 |
T |
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| Q |
101 |
tcatatatt |
109 |
Q |
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||||||||| |
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| T |
19695 |
tcatatatt |
19703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 13611568 - 13611662
Alignment:
| Q |
118 |
cataatcaaataactcacaaatacacattgtca-----------aataattaatctttatacaatcacttggaaaagaagtatattattttgagc |
201 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13611568 |
cataatcaaataactcacaaatacacattgtcaaataatcgtcaaataatttatctttatacaatcacctggaaaagaagtatattattttgagc |
13611662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 41095672 - 41095578
Alignment:
| Q |
118 |
cataatcaaataactcacaaatacacattgtcaaataat-----------taatctttatacaatcacttggaaaagaagtatattattttgagc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41095672 |
cataatcaaataactcacaaatacacattgtcaaataatcgtcaaataatttatctttatacaatcacctggaaaagaagtatattattttgagc |
41095578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 14048177 - 14048271
Alignment:
| Q |
118 |
cataatcaaataactcacaaatacacattgtca-----------aataattaatctttatacaatcacttggaaaagaagtatattattttgagc |
201 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
14048177 |
cataatcaaataactcacaaatacacattgtcaaataatcgtcaaataatttatctctatacaatcacctggaaaagaagtatattattttgagc |
14048271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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