View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_43 (Length: 203)
Name: NF16748_low_43
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 41824992 - 41825157
Alignment:
| Q |
24 |
attaagtgctgataaaaagaaagctaatggtttattacaaaagaaagggaaatggaaatcagtttccaaaggaatgatggaaaaggggtactatgtttca |
123 |
Q |
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| T |
41824992 |
attaagtgctgataaaaagaaagctaatggtttattacaaaagaaagggaaatggaaatcagtttccaaaggaatgatggaaaaagggtactatgtttca |
41825091 |
T |
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| Q |
124 |
cctcaacaatgtgaagacaagttcaatgatttgaacaaaaggtataaaagagttaatgatattctt |
189 |
Q |
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| T |
41825092 |
cctcaacaatgtgaagacaagttcaatgatttgaacaaaaggtataaaagagttaatgatattctt |
41825157 |
T |
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Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 26920265 - 26920131
Alignment:
| Q |
51 |
tggtttattacaaaagaaagggaaatggaaatcagtttccaaaggaatgatggaaaaggggtactatgtttcacctcaacaatgtgaagacaagttcaat |
150 |
Q |
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|||||| ||||| ||||| || || |||||||| ||||| | | ||||||||||| |||| ||||| |||||||||||||||||||| ||||| ||| |
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| T |
26920265 |
tggtttgttacagaagaagggaaagtggaaatctgtttcaagggctatgatggaaaaagggttttatgtgtcacctcaacaatgtgaagataagtttaat |
26920166 |
T |
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| Q |
151 |
gatttgaacaaaaggtataaaagagttaatgatat |
185 |
Q |
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| T |
26920165 |
gatttgaataaaaggtataagagagtgaatgatat |
26920131 |
T |
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