View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16749_high_10 (Length: 215)
Name: NF16749_high_10
Description: NF16749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16749_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 52319441 - 52319671
Alignment:
| Q |
1 |
ttaagcaaaattgttgtaacaagtttttcttttgaaacttacctcattggcttgtcccccgaactcaaaattagagcatg----------------attt |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
52319441 |
ttaagcaaaattgttgtaacaagtttttcttttgaaacttacctcattggcttgtcacccgaactcaaaattagagcatgatgagctttctccatgattt |
52319540 |
T |
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| Q |
85 |
cttttttattcaaataagaaaatgtagttggtaaattcttttctccaagtaaaacacctgctaaacctttatgaactatatgagtttcgtcttgagtcgc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52319541 |
cttttttattcaaataagaaaatgtagttggtaaattcttttctccaagtaaaacacctgctaaacctttatgaactatatgagtttcgtcttgagtcgc |
52319640 |
T |
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| Q |
185 |
catagacgaagatcattcttgccatttaact |
215 |
Q |
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|||||||||| ||||||||||||||| |||| |
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| T |
52319641 |
catagacgaaaatcattcttgccattgaact |
52319671 |
T |
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