View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16749_high_8 (Length: 235)
Name: NF16749_high_8
Description: NF16749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16749_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 11640685 - 11640512
Alignment:
| Q |
29 |
acagataaaaccaataaataatacgactaatgagtcttcatcatatttacaatcaaaataagaaacatagacaaaaac-cacttgataataccacaaatt |
127 |
Q |
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| T |
11640685 |
acagataaaaccagtgaataataccactaatgagtcttcatcatatttacaaccaaaataagaaacatagaaaaaaaaacccttgataatatcacaaacg |
11640586 |
T |
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| Q |
128 |
agtttgcttcataatataatatacaaaggaaattgttgatcaaacttctatatcaactcaacattatatatcac |
201 |
Q |
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| T |
11640585 |
agtttgcttcataatataatatacaaaggaaattgttgatgaaacttgtatatcaactcaacattatatgtcac |
11640512 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 11631890 - 11631814
Alignment:
| Q |
19 |
aaataagtagacagataaaaccaataaataatacgactaatgagtcttcatcatatttacaatcaaaataagaaacat |
96 |
Q |
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||||||||||| ||| || ||| || |||||||| |||| | |||||||| |||||||||||||||| ||||||||| |
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| T |
11631890 |
aaataagtagatagaaaatacccatgaataataccactacag-gtcttcataatatttacaatcaaaacaagaaacat |
11631814 |
T |
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