View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16749_low_1 (Length: 743)
Name: NF16749_low_1
Description: NF16749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16749_low_1 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 23 - 743
Target Start/End: Original strand, 31516977 - 31517697
Alignment:
| Q |
23 |
ggaactggaaagcttacatttttgaattgcaaaacccaaaatggaaatgggtttggtttatcaggttcagatttcaatggtaagagcttaatttccccaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31516977 |
ggaactggaaagcttacatttttgaattgcaaaacccaaaatggaaatgggtttggtttatcaggttcagatttcaatggtaagagcttaatttccccaa |
31517076 |
T |
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| Q |
123 |
aaacaagtatcaatgctaaaattagggtttccaatttgaagagaaacattgtagtacgttctagttctagtgtatcatcttcaagaccaagttcacaacc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31517077 |
aaacaagtatcaatgctaaaattagggtttccaatttgaagagaaacattgtagtacgttctagttctagtgtatcatcttcaagaccaagttcacaacc |
31517176 |
T |
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| Q |
223 |
taggtttatacaacacaaaaaagaagcattttggttttataggtttctttcaattgtgtatgaccatgttataaaccctggtcattggactgaagatatg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31517177 |
taggtttatacaacacaaaaaagaagcattttggttttataggtttctttcaattgtgtatgaccatgttataaaccctggtcattggactgaagatatg |
31517276 |
T |
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| Q |
323 |
agagatgaagctcttgaaccagctgaacttactgataggaatatgcttgttgttgatgttggtggtggtactggtttcactacattgggtattgttaagc |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31517277 |
agagatgaagctcttgaaccagctgaacttactgataggaatatgattgttgttgatgttggtggtggtactggtttcactacattgggtattgttaagc |
31517376 |
T |
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| Q |
423 |
atgtcgatgctaagaatgtgactattcttgatcagtcacctcatcagcttgctaaagctaaggaaaaggaaccgcttaaggattgtaaaattgttgaagg |
522 |
Q |
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| T |
31517377 |
atgtcgatgctaagaatgtgactattcttgatcagtcacctcatcagcttgctaaagctaaggaaaaggagccgcttaaggattgtaaaattgttgaagg |
31517476 |
T |
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| Q |
523 |
ggatgctgaagatttaccctttcgaactgattatgctgatagatatgtgtccgctggaaggtatatcgatgtcttaacatatccatgctgtttcatatgc |
622 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31517477 |
ggatgctgaagatttaccctttcgaactgattatgctgatagatatgtgtccgctggaaggtatatcgatgtcttcacatatccatgctgtttcatatgc |
31517576 |
T |
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| Q |
623 |
ctttaaataatgatgcatggttaatttctataaaattgcatttgcatgttgttaagtaatgatgccttaagtaatgtcatcactatacgcatggcttatt |
722 |
Q |
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| T |
31517577 |
ctttaaataatgatgcatgtttaatttctataaaattgcatttgcatgttgttaagtaatgatgccttaagtaatgtcatcactatacgcatggcttatt |
31517676 |
T |
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| Q |
723 |
tgagcttatttactggcataa |
743 |
Q |
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| T |
31517677 |
tgagcttatttactggcataa |
31517697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 233 - 586
Target Start/End: Complemental strand, 34139963 - 34139610
Alignment:
| Q |
233 |
caacacaaaaaagaagcattttggttttataggtttctttcaattgtgtatgaccatgttataaaccctggtcattggactgaagatatgagagatgaag |
332 |
Q |
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|||||||| |||||||||||||||||||| |||||| | |||||||| ||||| ||| | ||||| || ||||||||||||||||| ||||||||||| | |
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| T |
34139963 |
caacacaagaaagaagcattttggttttacaggtttttgtcaattgtatatgatcatataataaatccaggtcattggactgaagacatgagagatgatg |
34139864 |
T |
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| Q |
333 |
ctcttgaaccagctgaacttactgataggaatatgcttgttgttgatgttggtggtggtactggtttcactacattgggtattgttaagcatgtcgatgc |
432 |
Q |
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| T |
34139863 |
cacttgagcctgctgatttgtatgaccggagaatgcgagttgtggatgttggaggaggaactggattcactactcttggtatagtgaagcatgttgatgc |
34139764 |
T |
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| Q |
433 |
taagaatgtgactattcttgatcagtcacctcatcagcttgctaaagctaaggaaaaggaaccgcttaaggattgtaaaattgttgaaggggatgctgaa |
532 |
Q |
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||| ||||| || |||||||||||||| |||||||||||||||| |||||| | |||||| | | || || ||||| || ||||||| ||||| ||| |
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| T |
34139763 |
taaaaatgttacaattcttgatcagtctcctcatcagcttgctagggctaagaagaaggaagcattgaaagaatgtaagataattgaaggcgatgcagaa |
34139664 |
T |
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| Q |
533 |
gatttaccctttcgaactgattatgctgatagatatgtgtccgctggaaggtat |
586 |
Q |
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| T |
34139663 |
gatcttccatttccaactgattatgctgaccgatatgtttctgctggaaggtat |
34139610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 743
Target Start/End: Original strand, 42659139 - 42659168
Alignment:
| Q |
714 |
tggcttatttgagcttatttactggcataa |
743 |
Q |
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| T |
42659139 |
tggcttatttgagcttatttactggcataa |
42659168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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