View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16749_low_11 (Length: 215)
Name: NF16749_low_11
Description: NF16749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16749_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 7820804 - 7820638
Alignment:
| Q |
32 |
tgtgtcatccattagattgttcttcattagccacatgataaaaaagttaagagtaactaaaaccaaagttgattatatttacaagaatcaaatgcaaaaa |
131 |
Q |
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| T |
7820804 |
tgtgtcatccattagatggttcttcattaaccacatgataaaaaagtttagagtaactaaaaccaaagttgattatatttacaagaatcaaatgcaaaaa |
7820705 |
T |
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| Q |
132 |
caaacctaaaaataaagacggattgaattaccctttgatggttttctcattattccaccaatgtcct |
198 |
Q |
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| T |
7820704 |
caaacctaaaaataaagacggattgaattaccctttgatgattttctcattattccacaaatgtcct |
7820638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 7810828 - 7810662
Alignment:
| Q |
34 |
tgtcatccattagattgttcttcattagccacatgataaaaaa-gttaagagtaactaaaaccaaagttgattatatttacaagaatcaaatgcaaaaac |
132 |
Q |
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||||||||||||||| | ||||||| ||||||||||||||||| ||| ||| ||||||||| |||||| ||||||||| || |||||||||||| ||| |
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| T |
7810828 |
tgtcatccattagatggatcttcatcagccacatgataaaaaaagttttgaggaactaaaactaaagttcattatatttgcaggaatcaaatgcatgaac |
7810729 |
T |
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| Q |
133 |
aaacctaaaaat-aaagacggattgaattaccctttgatggttttctcattattccaccaatgtcct |
198 |
Q |
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| T |
7810728 |
aaacctaaaaattaaagaaggattggaataccatttgatggttttctcattattccaccaatgtcct |
7810662 |
T |
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