View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16749_low_3 (Length: 476)
Name: NF16749_low_3
Description: NF16749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16749_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 38083266 - 38083713
Alignment:
| Q |
17 |
attactaaagtttggtgttaaacttgacatatgtttgtgtttattgaaaggatattcctgcgaaaactgctggttacaccccctatattcgtagttagcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38083266 |
attactaaagtttggtgttaaacttgacatatatttgtgtttattgaaaggatattcctgcgaaaactgctggttacaccccctatatttgtagttagcc |
38083365 |
T |
|
| Q |
117 |
ctttgacaccatttaatcaacaaaatggccaaagaacgcctataattagccggtaacagttgccaaaactttcgagatacatgctcgtatatcttcaacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38083366 |
ctttgacaccatttaatcaacaaaatggccaaagaatgcctataactagccggtaacagttgctaaaactttcgagatacatgctcatatatcttcaacg |
38083465 |
T |
|
| Q |
217 |
acaactttgaatgacatcacaagttagctaaactatcagtacatttattagtttctcggaaaatatgcttaattctggcctcatgatcttcttattggga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38083466 |
acaactttgaatgacatcacaagttagctaaactatcagtacatttattagtttctcggaaaatatgcttaattttggcctcatgatcttcttattggga |
38083565 |
T |
|
| Q |
317 |
acaacaagacctcacccattagtcgcgcttacatccttgccctacaaacaatcaactacattaattttagaatccataagaagcctcctacatgttaaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38083566 |
acaacaagacctcacccattagtcgcgcttacatacttgccctacaaacaatcaactacattaactttagaatccataagaagcctcctacatgttaaat |
38083665 |
T |
|
| Q |
417 |
atctttttcttgtgaattgaagaccctcttatcatctactcctatgct |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38083666 |
atctttttcttgtgaattgaagaccctcttatcatctactcctatgct |
38083713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University