View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16750_high_14 (Length: 300)
Name: NF16750_high_14
Description: NF16750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16750_high_14 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: scaffold0144 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 37563 - 37311
Alignment:
| Q |
26 |
catcatgggaactaaggttcatcctttagcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37563 |
catcatgggaactaaggttcatcctttagcacagttatctgatgatgacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
37464 |
T |
|
| Q |
126 |
gcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37463 |
gcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatg |
37364 |
T |
|
| Q |
226 |
aacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37363 |
aacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
37311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 16658085 - 16657833
Alignment:
| Q |
26 |
catcatgggaactaaggttcatcctttagcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658085 |
catcatgggaactaaggttcatcctttagcacagttatctgatgatgacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
16657986 |
T |
|
| Q |
126 |
gcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatg |
225 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16657985 |
gcagatcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttacgctttaaaagcgatg |
16657886 |
T |
|
| Q |
226 |
aacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657885 |
aacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
16657833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 16868088 - 16868340
Alignment:
| Q |
26 |
catcatgggaactaaggttcatcctttagcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868088 |
catcatgggaactaaggttcatcctttagcacagttatctgatgatgacatctgatcgttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
16868187 |
T |
|
| Q |
126 |
gcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868188 |
gcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatg |
16868287 |
T |
|
| Q |
226 |
aacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
278 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16868288 |
aacatcaatggacttctgtggtggaaagtgagttttggaatttagcagatgat |
16868340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 16837753 - 16837525
Alignment:
| Q |
26 |
catcatgggaactaaggttcatcctttagcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837753 |
catcatgggaactaaggttcatcctttagcacagttatctgatgatgacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
16837654 |
T |
|
| Q |
126 |
gcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837653 |
gcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatg |
16837554 |
T |
|
| Q |
226 |
aacatcaatggatttctgtggtggaaagt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16837553 |
aacatcaatggatttctgtggtggaaagt |
16837525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 44 - 270
Target Start/End: Complemental strand, 17069561 - 17069335
Alignment:
| Q |
44 |
tcatcctttagcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaata |
143 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17069561 |
tcatcctttatcacggttatctgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaagagagaagggcgtgcagagcttgtggaaata |
17069462 |
T |
|
| Q |
144 |
ggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctg |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069461 |
ggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctg |
17069362 |
T |
|
| Q |
244 |
tggtggaaagtgagttttggaatttag |
270 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17069361 |
tggtggaaagtgagttttggaatttag |
17069335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 16797242 - 16796999
Alignment:
| Q |
26 |
catcatgggaactaaggttcatcctttagcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgt |
125 |
Q |
| |
|
||||||||||||| | ||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
16797242 |
catcatgggaacttatgttcatcatttaacacggttatctgatgatgacatctggtctttgttcaaacaacaagcttttggagcaaatagagaagagcgt |
16797143 |
T |
|
| Q |
126 |
gcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatg |
225 |
Q |
| |
|
||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |
|
|
| T |
16797142 |
gcagagcttgtggcaataggcaagaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcagtttgcgctttacaagcgacg |
16797043 |
T |
|
| Q |
226 |
aacatcaatggatttctgtggtggaaagtgagttttggaattta |
269 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
16797042 |
aacatcaatggatttctgtactggaaagtgaattttggaattta |
16796999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 71 - 279
Target Start/End: Complemental strand, 16787995 - 16787787
Alignment:
| Q |
71 |
tgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtg |
170 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
16787995 |
tgacatctggtctttgttcaaacaacaagctttcagagaaaatagagaagaacgtgcagagcttgtggaaataggcaagaagttagtgagaaaatgtgtg |
16787896 |
T |
|
| Q |
171 |
ggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttag |
270 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16787895 |
ggttcaactcttgctgctaaagtattgggaagcagtttgcgatttacaagcgacgaacatcaatggatttctgtactggaaagtgagttttggaatttaa |
16787796 |
T |
|
| Q |
271 |
ctgatgatg |
279 |
Q |
| |
|
|||| |||| |
|
|
| T |
16787795 |
ctgaggatg |
16787787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 279
Target Start/End: Complemental strand, 16987493 - 16987274
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||||| |||| |||| |||||| |||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
16987493 |
ttatctgatgatcacatctggtctttgttcaaacaacaagctttcggagaaaatggagaagagcgtgcagagcttgtggaaataggtaagaagttggtga |
16987394 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||| || |||||||||||||||||||| ||||||||||| | |
|
|
| T |
16987393 |
gaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaacgtgaaactgacgaacatcaatggatttctgtactggaaagtgagat |
16987294 |
T |
|
| Q |
260 |
ttggaatttagctgatgatg |
279 |
Q |
| |
|
|||||||||| |||| |||| |
|
|
| T |
16987293 |
ttggaatttacctgaggatg |
16987274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 60 - 264
Target Start/End: Original strand, 18873312 - 18873516
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| |||||||| |||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
18873312 |
ttatctgatgatgccatctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtga |
18873411 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
259 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| | |||||||||||||||||||||| || |||||||||||| ||||||| ||||||| |||| |
|
|
| T |
18873412 |
gaaaatgtgtgggttctcctcttgccgcaaaagtactaggaagccttttgcgctttaaaactgaggaacatcaatggctttctgtaaaggaaagtaagtt |
18873511 |
T |
|
| Q |
260 |
ttgga |
264 |
Q |
| |
|
||||| |
|
|
| T |
18873512 |
ttgga |
18873516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 60 - 264
Target Start/End: Original strand, 18806318 - 18806522
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| |||||||| ||||||| |||||| |||||| | ||||||| | |||||||||||| ||| ||||||||||||| ||||||| | ||||||||| |
|
|
| T |
18806318 |
ttatctgatgatgcaatctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgagcagagcttgtggcaataggcaaggagttagtga |
18806417 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
259 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| | |||||||||||||||||||||| || |||||||||||| ||||||| ||||||| |||| |
|
|
| T |
18806418 |
gaaaatgtgtgggttcacctcttgccgcaaaagtactaggaagccttttgcgctttaaaactgaggaacatcaatggctttctgtaaaggaaagtaagtt |
18806517 |
T |
|
| Q |
260 |
ttgga |
264 |
Q |
| |
|
||||| |
|
|
| T |
18806518 |
ttgga |
18806522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 274
Target Start/End: Complemental strand, 16781108 - 16780924
Alignment:
| Q |
90 |
aaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgcta |
189 |
Q |
| |
|
|||||||| ||||||||| | ||| | |||| || ||||||||||| | ||||||| | || |||||| |||||||||||||||||| |||||||| | |
|
|
| T |
16781108 |
aaacaacacgcttttggacctaatggggaagagcctgcagagcttgcagcaataggcaaggagatagtgataaaatgtgtgggttcaccacttgctgcca |
16781009 |
T |
|
| Q |
190 |
aagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctga |
274 |
Q |
| |
|
| || ||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||| ||||||| ||| |||| |
|
|
| T |
16781008 |
aggttttgggaagccttttgcgctttaaaaatgaggaacatcaatggctttctgtaaaggaaagtgagctttggaagttatctga |
16780924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 275
Target Start/End: Complemental strand, 16843828 - 16843627
Alignment:
| Q |
74 |
catctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggt |
173 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| | ||||||| |||||||| ||||| |||||| | || |||| ||||||||||||||| |
|
|
| T |
16843828 |
catctggtctttgttcaagcaacacgcttttggagctgaaagagaagaacgtgcagaccttgtaacaataggtaaggagatagttagaaaatgtgtgggt |
16843729 |
T |
|
| Q |
174 |
tcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctg |
273 |
Q |
| |
|
|| ||||||||||| |||||| | ||||||||| |||| ||||||| || ||| ||||||| ||||| | |||||||||| ||||||||||| ||| |
|
|
| T |
16843728 |
tcgcctcttgctgccaaagtactaggaagccttctgcggtttaaaactgaggaatgtcaatggctttctataaaggaaagtgagatttggaatttatctg |
16843629 |
T |
|
| Q |
274 |
at |
275 |
Q |
| |
|
|| |
|
|
| T |
16843628 |
at |
16843627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 60 - 274
Target Start/End: Complemental strand, 12888 - 12674
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
12888 |
ttatctgatgatgacatctggtctttgttcaaacaacaagcttttgtagcaaatagagaagagcgtgcagagcttgtggcaataggcaaaaagttagtga |
12789 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||| || |||||||||||||||||||| | ||||||||||| |
|
|
| T |
12788 |
gaaaatgtgtgggttcacctcttgctgctaaagtattaggaagcagtttgtgctttacaagtgacgaacatcaatggatttctgtactagaaagtgagtt |
12689 |
T |
|
| Q |
260 |
ttggaatttagctga |
274 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
12688 |
ttggagtttacctga |
12674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 60 - 268
Target Start/End: Complemental strand, 8546 - 8338
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
8546 |
ttatctgatgatgacatctggtctttgttcaaacaacaagcttttggagaaaatcgagaagagcgtgcagagcttgtggcaataggcaaaaagttagtga |
8447 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || |||| | |||||||||||||||||||| |||||||||| || |
|
|
| T |
8446 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggtagcagtttgtgctgtacaagcaacgaacatcaatggatttctgtactggaaagtgaatt |
8347 |
T |
|
| Q |
260 |
ttggaattt |
268 |
Q |
| |
|
||||||||| |
|
|
| T |
8346 |
ttggaattt |
8338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 274
Target Start/End: Complemental strand, 18094 - 17880
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| |||||||||||| ||||| || || |||||||||||| ||||| ||||| | || | ||| |||||||||| | |||||| | || |||||| |
|
|
| T |
18094 |
ttatatgatgatgacatttggtcattatttaaacaacatgctgttggaccaaatggggaggagcgcgcagagcttgcagcaataggtaaggagatagtga |
17995 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
259 |
Q |
| |
|
||||||| |||||||||||||||||||| || || |||||||||||| ||||||||||||| || |||||||||||| ||||||| |||||||||| | |
|
|
| T |
17994 |
gaaaatgcgtgggttcacctcttgctgccaaggttttgggaagccttctgcgctttaaaagtgaggaacatcaatggctttctgtaaaggaaagtgaggt |
17895 |
T |
|
| Q |
260 |
ttggaatttagctga |
274 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
17894 |
ttggaatttatctga |
17880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 60 - 274
Target Start/End: Original strand, 38939481 - 38939695
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| |||||| ||||| ||||| || || |||||||||||||||||| || || | |||| || |||||||||||| | ||||||| | || |||||| |
|
|
| T |
38939481 |
ttatatgatgacgacatttggtcattatttaaacaacatgcttttggaccagatggggaagagcatgcagagcttgtagcaataggcaaggagatagtga |
38939580 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||| | |
|
|
| T |
38939581 |
gaaaatgtgtgggttcacctcttgctgccaaagtattgggaagccttttgcgctttaaaagtgaggaacatcaatggttttctgtaaaggaaagtgagct |
38939680 |
T |
|
| Q |
260 |
ttggaatttagctga |
274 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
38939681 |
ttggaatttatctga |
38939695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 274
Target Start/End: Original strand, 7053388 - 7053602
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||||| | |||||||| ||||| |||||| || ||||||||||| ||||||| | || |||||| |
|
|
| T |
7053388 |
ttatctgatgatgacatttggcctttgttcaaacactgtacttttggaccaaatggagaagagcatgcagagcttgccacaataggcaaggagatagtga |
7053487 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
259 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||| | || ||||||||||| ||||| | |||||| |||| |
|
|
| T |
7053488 |
gaaaatgtgtgggttcacctcttgcagcaaaagtattaggaagccttttacgatttaaacgtgagaaacatcaatggctttctataaaggaaagcaagtt |
7053587 |
T |
|
| Q |
260 |
ttggaatttagctga |
274 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
7053588 |
ttggaatttatctga |
7053602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 264
Target Start/End: Complemental strand, 4712 - 4507
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| |||||||| |||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
4712 |
ttatctgatgatgccatctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtga |
4613 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcc-ttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagt |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| | ||||||| |||||||||||||||| || |||||||||||| ||||||| ||||||| ||| |
|
|
| T |
4612 |
gaaaatgtgtgggttcgcctcttgctgccaaagtactaggaagcctttttgcgctttaaaagtgaggaacatcaatggctttctgtaaaggaaagtaagt |
4513 |
T |
|
| Q |
259 |
tttgga |
264 |
Q |
| |
|
|||||| |
|
|
| T |
4512 |
tttgga |
4507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 9392 - 9208
Alignment:
| Q |
60 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
159 |
Q |
| |
|
|||| |||||||| |||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
9392 |
ttatctgatgatgccatctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtga |
9293 |
T |
|
| Q |
160 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgt |
244 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| | ||||| ||||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
9292 |
gaaaatgtgtgggttcgcctcttgccgccaaagtactaggaagtcttttgcgctttaaaagtgaggaacatcaatggctttctgt |
9208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 65 - 274
Target Start/End: Complemental strand, 13378125 - 13377916
Alignment:
| Q |
65 |
tgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaa |
164 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| ||||||| ||||| | ||| | |||| |||||||||||||| | ||||||| | || ||||||||||| |
|
|
| T |
13378125 |
tgatgaagacatttggtctttgtttaaactacatgctattggacctaatggggaagagcgtgcagagcttgcagcaataggcaaggagatagtgagaaaa |
13378026 |
T |
|
| Q |
165 |
tgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttgga |
264 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||| |||||||||||| || |||||||||||| ||||||| ||||||| || |||||| |
|
|
| T |
13378025 |
tgtgtgggttcacctcttgctgccaaggttttgggaagcctttcgcgctttaaaagtgaggaacatcaatggctttctgtaaaggaaagtaagctttgga |
13377926 |
T |
|
| Q |
265 |
atttagctga |
274 |
Q |
| |
|
||||| |||| |
|
|
| T |
13377925 |
atttatctga |
13377916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 279
Target Start/End: Complemental strand, 9094 - 8971
Alignment:
| Q |
156 |
gtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||| | ||||| |||||||| |
|
|
| T |
9094 |
gtgagaaaatgtgtgggttcacctcttgctgccaaagtattgggaagtcttttgtgctttaaaagtgaggaacatcaatggctctctgtcaaggaaagtg |
8995 |
T |
|
| Q |
256 |
agttttggaatttagctgatgatg |
279 |
Q |
| |
|
|| ||||||||||| |||| |||| |
|
|
| T |
8994 |
agctttggaatttaactgaggatg |
8971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 30207146 - 30207085
Alignment:
| Q |
84 |
ttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaatagg |
145 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30207146 |
ttgttcaaacaatatgcatttggacaaaatagagaagagcgtgcagagcttgtggaaatagg |
30207085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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