View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16750_high_4 (Length: 356)

Name: NF16750_high_4
Description: NF16750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16750_high_4
NF16750_high_4
[»] chr5 (7 HSPs)
chr5 (1-356)||(38816349-38816704)
chr5 (20-169)||(38821782-38821928)
chr5 (299-348)||(8420075-8420124)
chr5 (301-353)||(9929668-9929720)
chr5 (301-356)||(22423764-22423820)
chr5 (299-329)||(24906250-24906280)
chr5 (240-278)||(35665559-35665597)
[»] chr1 (1 HSPs)
chr1 (301-354)||(48547938-48547991)
[»] chr6 (5 HSPs)
chr6 (301-348)||(426478-426525)
chr6 (301-348)||(5732474-5732521)
chr6 (299-329)||(34073276-34073306)
chr6 (301-342)||(2117134-2117175)
chr6 (301-337)||(8805524-8805560)
[»] chr2 (6 HSPs)
chr2 (301-348)||(19536361-19536408)
chr2 (301-348)||(19574031-19574078)
chr2 (302-348)||(18255945-18255991)
chr2 (302-348)||(34691770-34691816)
chr2 (302-348)||(34714182-34714228)
chr2 (301-337)||(42511322-42511358)
[»] chr3 (4 HSPs)
chr3 (299-337)||(4466538-4466576)
chr3 (299-329)||(5440965-5440995)
chr3 (299-337)||(13807237-13807275)
chr3 (301-337)||(27505334-27505370)
[»] chr7 (2 HSPs)
chr7 (300-329)||(17852091-17852120)
chr7 (301-329)||(15680900-15680928)
[»] scaffold0450 (1 HSPs)
scaffold0450 (301-329)||(8564-8592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (299-347)||(46731-46778)
[»] chr4 (2 HSPs)
chr4 (301-345)||(18844423-18844467)
chr4 (301-337)||(28470448-28470484)


Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 38816349 - 38816704
Alignment:
Q  1 aaaatctagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816349 aaaatctagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctcct 38816448  T
Q  101 tcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816449 tcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataa 38816548  T
Q  201 atatctcccataaatatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816549 atatctcccataaatatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataa 38816648  T
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccga 356  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816649 ctatgaatcacggacactcctcgaattagccatgtccgacaccgacaccacaccga 38816704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
Q  20 aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa 119  Q
    |||||||||||||||| |||||  ||| ||||||| ||   ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |    
T  38821782 aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca 38821878  T
Q  120 ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca 169  Q
      ||||  |||||||||||||| |||||||||||||||| ||||||||||    
T  38821879 ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca 38821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  299 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 348  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 353  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 22423764 - 22423820
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccga 356  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| |||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccga 22423820  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 329
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  299 aactatgaagcacggacactcctcgaattag 329  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
Q  240 aaggtgtgtccagtgtccaacagatgtcagtctccaaca 278  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  35665559 aaggtgtgtccagtgtccaacacatgtcagtttccaaca 35665597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 354  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 348  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 5732474 - 5732521
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 348  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 5732521  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 329
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  299 aactatgaagcacggacactcctcgaattag 329  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacac 342  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 8805524 - 8805560
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtcc 337  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcc 8805560  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 348  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 19574078 - 19574031
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 348  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacac 19574031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  302 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 348  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  302 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 348  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  302 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 348  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 42511322 - 42511358
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtcc 337  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtcc 42511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  299 aactatgaagcacggacactcctcgaattagccatgtcc 337  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 329
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  299 aactatgaagcacggacactcctcgaattag 329  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  299 aactatgaagcacggacactcctcgaattagccatgtcc 337  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 27505370 - 27505334
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtcc 337  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcc 27505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  300 actatgaagcacggacactcctcgaattag 329  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  301 ctatgaagcacggacactcctcgaattag 329  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  301 ctatgaagcacggacactcctcgaattag 329  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 46778 - 46731
Alignment:
Q  299 aactatgaagcacggacactcctcgaattagccatgtccgacaccgaca 347  Q
    ||||||||||||||||||||||||| ||||| | ||| |||||||||||    
T  46778 aactatgaagcacggacactcctcggattaggcgtgt-cgacaccgaca 46731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 18844423 - 18844467
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtccgacaccga 345  Q
    |||||||||||||||||| |||| ||||| | |||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtccgacaccga 18844467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  301 ctatgaagcacggacactcctcgaattagccatgtcc 337  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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