View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_10 (Length: 608)
Name: NF16751_high_10
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 21 - 589
Target Start/End: Complemental strand, 39395614 - 39395046
Alignment:
| Q |
21 |
atcatgtcttttatattaagactaaaagttttgcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatgcccctttg |
120 |
Q |
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| T |
39395614 |
atcatgtcttttatattaagactaaaagttttgcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatgcccctttg |
39395515 |
T |
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| Q |
121 |
tttttgtaccttcctttgttgttaaatatttctctaaatcttcgattcgaaactctttggttgatgtttctgatagcattttcttcaactctttgatatt |
220 |
Q |
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| T |
39395514 |
tttttgtaccttcctttgttgttaaatatttctctaaatcttcgattcgaaactctttggttgatgtttctgatagcattttcttcaactctttgatatt |
39395415 |
T |
|
| Q |
221 |
ctcaaatgatgcagcttcatgaattttcaacatctcattctcatgaacaagcaaactcagactatcttgtaatctaccattttcagcttttgcaatttcg |
320 |
Q |
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| T |
39395414 |
ctcaaatgatgcagcttcatgaattttcaacatctcattctcatgaacaagcaaactcagactatcttgtaatctaccattttcagcttttgcaatttcg |
39395315 |
T |
|
| Q |
321 |
gcagcttctttcgcaacattagcttcattcaaagcttgttttagtatgtcgcgcaatttttgattctcttcctttgaaacttttgttttactctcagctt |
420 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395314 |
gaagcttctttcgcaacattagcttcattcagagcttgttttagtatgtcgcgcaatttttgattctcttcctttgaaacttttgttttactctcagctt |
39395215 |
T |
|
| Q |
421 |
cttgaagcaaatctagtaatcttgatgtttcctgttgtgcaagcaacctttcctcatcagctcttttaatacaagtaacaaactcagtttcttttccatt |
520 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395214 |
cttgaagcaaatctagtaatcttgatgtttcttgttgtgcaagcaacctttcctcatcagctcttttaatacaagtaacaaactcagtttcttttccatt |
39395115 |
T |
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| Q |
521 |
ccatgctaaaagtgattcttcagcttctaatctcaatctctccgcggtgtttttgaacctctcagcttc |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395114 |
ccatgctaaaagtgattcttcagcttctaatctcaatctctccgcggtgtttttgaacctctcagcttc |
39395046 |
T |
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