View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_high_18 (Length: 488)

Name: NF16751_high_18
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_high_18
NF16751_high_18
[»] chr8 (4 HSPs)
chr8 (1-471)||(9677624-9678097)
chr8 (1-226)||(9693365-9693590)
chr8 (118-163)||(30652024-30652069)
chr8 (272-300)||(9693594-9693622)
[»] chr4 (5 HSPs)
chr4 (9-211)||(35160435-35160637)
chr4 (1-211)||(35154044-35154254)
chr4 (1-165)||(15555032-15555196)
chr4 (12-126)||(37147414-37147528)
chr4 (118-163)||(16298996-16299041)
[»] chr3 (12 HSPs)
chr3 (7-168)||(46469649-46469810)
chr3 (13-168)||(5155227-5155382)
chr3 (6-165)||(46478252-46478411)
chr3 (8-186)||(4582493-4582671)
chr3 (8-166)||(16023908-16024066)
chr3 (95-184)||(51942045-51942134)
chr3 (6-90)||(46507113-46507197)
chr3 (1-93)||(47398302-47398394)
chr3 (1-111)||(46490048-46490158)
chr3 (1-108)||(46497368-46497475)
chr3 (8-82)||(47414953-47415027)
chr3 (11-111)||(45900912-45901012)
[»] chr6 (1 HSPs)
chr6 (12-163)||(16967863-16968014)
[»] chr2 (4 HSPs)
chr2 (40-168)||(20154383-20154511)
chr2 (7-146)||(20143500-20143639)
chr2 (1-146)||(20169865-20170010)
chr2 (118-163)||(39548117-39548162)
[»] chr1 (1 HSPs)
chr1 (118-163)||(33097480-33097525)


Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 9677624 - 9678097
Alignment:
Q  1 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9677624 agagacgaaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgaga 9677723  T
Q  101 acaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttggtgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9677724 acaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggcgaccgtgagggaaactttcgcatggttggtgc 9677823  T
Q  201 ttgattgatcaaggtgagccattgtttgttgnnnnnnnnnnnnnnnnngcgaaccattgtttgttaatttccttcttttgatttttcaactgtaccagaa 300  Q
    ||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9677824 ttgattgatcaaggtgagccattgtttgtt--ttttttgtttttttttgcgaaccattgtttgttaatttccttcttttgattttccaactgtaccagaa 9677921  T
Q  301 aagcaatcacagggagagaaacacttcgatgaggaacacaacaatgcagtaattgaaatttaacagaacgcataaatgaaa------acgagtaaaccac 394  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||      |||||||||||||    
T  9677922 aag-aatcacagggagagaaacacttccatgaggaacacaacaatgcagtaattgaaatttaacagaacgcataagtgaaaactttcacgagtaaaccac 9678020  T
Q  395 taaactttaactaattgctagacgttgtaaggacactctcaaataagttcttgagattatgaatatatggaattagt 471  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9678021 taaactttaactaatcgctagacgctgtaaggacactctcaaataagttcttgagattatgaatatatcgaattagt 9678097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 9693365 - 9693590
Alignment:
Q  1 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 100  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  9693365 agagacaaagaagttgagatgatcgatggatttgaaacggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgaga 9693464  T
Q  101 acaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttggtgc 200  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |  |||||||||| |||||| | ||||||||    
T  9693465 acaacttggagagacaatggtgaaaagacgacattcttgtctgattcttttgagaagagatgtttggcgatggtgagggaaaatttcgcttggttggtgc 9693564  T
Q  201 ttgattgatcaaggtgagccattgtt 226  Q
    |||||| |||||||||||||||||||    
T  9693565 ttgattcatcaaggtgagccattgtt 9693590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 30652069 - 30652024
Alignment:
Q  118 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 163  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  30652069 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 30652024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 300
Target Start/End: Original strand, 9693594 - 9693622
Alignment:
Q  272 cttcttttgatttttcaactgtaccagaa 300  Q
    |||||||||||||||||||||||||||||    
T  9693594 cttcttttgatttttcaactgtaccagaa 9693622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 35160637 - 35160435
Alignment:
Q  9 aggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttg 108  Q
    ||||||||||||||||  |||||||||| ||||||||||| |||||||||||||| || | ||||||||||||| ||| ||| || ||||| ||||||||    
T  35160637 aggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttg 35160538  T
Q  109 gagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttggtgcttgattga 208  Q
    |||||||||||| ||||| |||| ||| || ||||||||||| ||||||||||||||| | |  ||||| ||||||||||  | |||| ||||||||| |    
T  35160537 gagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggttgttgcttgattca 35160438  T
Q  209 tca 211  Q
    |||    
T  35160437 tca 35160435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 35154254 - 35154044
Alignment:
Q  1 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 100  Q
    ||||||||||||||||||||||| |  |||||||||  ||||||||| ||||||||||||| | || | ||| ||||||||| ||||||||||    ||     
T  35154254 agagacgaaggagttgagatgataggcggatttgaattggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagc 35154155  T
Q  101 acaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttggtgc 200  Q
    || |||||||||||||| || ||||| ||||  || || |||||||| |||||||| ||||||||||| |  |||||||||||||||| || ||||  ||    
T  35154154 actacttggagagacaaaggcgaaaacacgatattcttttctgattcctttgagaaaagatgtttggcgatagtgagggaaactttcgtatggttgcagc 35154055  T
Q  201 ttgattgatca 211  Q
    |||||| ||||    
T  35154054 ttgattcatca 35154044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 15555196 - 15555032
Alignment:
Q  1 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 100  Q
    ||||| || ||||||||| |||| ||||||||| || ||||||||||||||||| ||||| || || | ||||||||||||| |||||||||| ||||||    
T  15555196 agagatgacggagttgagttgatggatggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgaga 15555097  T
Q  101 acaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgttt 165  Q
    | |||||| |  || |  |||||||| || | ||||||||  | || ||| ||||||||||||||    
T  15555096 ataacttgaatcgagagaggtgaaaacacaatgttgttgttgggttgtttagagaagagatgttt 15555032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 37147528 - 37147414
Alignment:
Q  12 agttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggag 111  Q
    |||||| ||||| ||||||||| ||   ||||||||||||||  |||||||| || |||||||  |||||| ||||||| ||||| ||||||||||||||    
T  37147528 agttgacatgattgatggatttaaagtcgaggaagtcgagaatttgttgttgtgtgggacccttggagccagcagcgataatacttagaacaacttggag 37147429  T
Q  112 agacaatggtgaaaa 126  Q
     ||||| || |||||    
T  37147428 cgacaagggcgaaaa 37147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 16299041 - 16298996
Alignment:
Q  118 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 163  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  16299041 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 16298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 46469810 - 46469649
Alignment:
Q  7 gaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaact 106  Q
    ||||||||||||||| |||||||||||| | |||||||| |||||||| |||||||| ||| ||||||||||| || ||||||  ||  |||| | ||||    
T  46469810 gaaggagttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataact 46469711  T
Q  107 tggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggc 168  Q
    ||||| ||||  || ||||| || ||||| ||||||||||||||||||||||||||||||||    
T  46469710 tggagtgacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggc 46469649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 5155382 - 5155227
Alignment:
Q  13 gttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggaga 112  Q
    ||||||||| ||  |||||||| || ||||||||||||||||||||||||| || ||||||||||||||| |||||||||| || || |||||||| |||    
T  5155382 gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 5155283  T
Q  113 gacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggc 168  Q
    |||| ||| ||||| || | ||| |||||| |||||||  |||| |||||||||||    
T  5155282 gacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggc 5155227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 46478411 - 46478252
Alignment:
Q  6 cgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaac 105  Q
    ||||| |||||||||||||| |||||||| |  | ||||||| || ||| ||||||||||| ||||||||||| |||  |||||| ||||| || |||||    
T  46478411 cgaagtagttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaac 46478312  T
Q  106 ttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgttt 165  Q
    |||||| || | ||| ||||| |||| |||||||||||||||||| ||||||||||||||    
T  46478311 ttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttt 46478252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 4582493 - 4582671
Alignment:
Q  8 aaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaactt 107  Q
    |||||||||||||||||  | |||||| |  | ||||||||||||||||||| |   || || || ||||||||| ||||||| || |||||  ||||||    
T  4582493 aaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaactt 4582592  T
Q  108 ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaacttt 186  Q
    |||| || | ||| ||||| || | ||| || |||||||||||||||||||||| |||||| |   |||||||||||||    
T  4582593 ggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttt 4582671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 16024066 - 16023908
Alignment:
Q  8 aaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaactt 107  Q
    ||||||||||||| || | | |||| | | |||||||||| ||||||||||||||| || || ||||| || ||| ||||||| |  |||||||||||||    
T  16024066 aaggagttgagattattggtagattcggagcggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaactt 16023967  T
Q  108 ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttg 166  Q
    | || || |  || ||||| | || ||| |||||||||| |||||| ||||||||||||    
T  16023966 gaagtgatagcggagaaaacatgatgttattgtctgattgttttgaaaagagatgtttg 16023908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 51942134 - 51942045
Alignment:
Q  95 ctgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaact 184  Q
    ||||| |||||||| ||||||||||| |||||||||| |||||| ||||||| ||||||||| | ||||||||| |   |||||||||||    
T  51942134 ctgagcacaacttgcagagacaatggcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact 51942045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 46507113 - 46507197
Alignment:
Q  6 cgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgat 90  Q
    |||| ||||||||||||| ||| |||||| | | ||||||||| |||| |||||||||||| ||||||||||||||  |||||||    
T  46507113 cgaatgagttgagatgatggatagatttggagcagaggaagtcaagaatctgttgttgagtgggaccctcagagccggcagcgat 46507197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 47398302 - 47398394
Alignment:
Q  1 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgat 93  Q
    |||| |||||||||||||||| ||  |||| ||| |||  |||||||||||||||| |||||| || ||||||||||||||| ||||| ||||    
T  47398302 agaggcgaaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgat 47398394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 46490158 - 46490048
Alignment:
Q  1 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 100  Q
    |||| |||| |||||||| |||||| |||| ||  |  |||||||||| |||||||||||||| || |  || ||||||||| |||||||||| |||||     
T  46490158 agaggcgaatgagttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagt 46490059  T
Q  101 acaacttggag 111  Q
    |||||||||||    
T  46490058 acaacttggag 46490048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 46497475 - 46497368
Alignment:
Q  1 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 100  Q
    |||| ||||||||||||| |||| | |||||||| |  ||||||||| |||||| |||||||| || || ||||| ||||||  ||||||||| || ||     
T  46497475 agaggcgaaggagttgagttgataggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgatgatgcttagc 46497376  T
Q  101 acaacttg 108  Q
    ||||||||    
T  46497375 acaacttg 46497368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 47414953 - 47415027
Alignment:
Q  8 aaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagcca 82  Q
    ||||||||||||||||| ||||||||  | | ||||||||||||||||| ||| || || | |||||||||||||    
T  47414953 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagcca 47415027  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 45901012 - 45900912
Alignment:
Q  11 gagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttgga 110  Q
    ||||||||||| ||| ||||||  ||  ||||||||| || |||||| ||||| || ||||||||||  ||| |||| ||||| ||||||| ||||||||    
T  45901012 gagttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttgga 45900913  T
Q  111 g 111  Q
    |    
T  45900912 g 45900912  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 16967863 - 16968014
Alignment:
Q  12 agttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggag 111  Q
    ||||||||||||||||||||||| |  ||||||| | || ||| ||||||||||| ||||||||||| |||| |||||| || || |  |||||||||||    
T  16967863 agttgagatgatcgatggatttggattggaggaatttgaaaagttgttgttgagtgggaccctcagaaccaaaagcgattatgcttaacacaacttggag 16967962  T
Q  112 agacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 163  Q
     || | ||||||||| |||| ||||||||| |||||||| ||||| ||||||    
T  16967963 tgagagtggtgaaaacacgatgttgttgtccgattctttggagaatagatgt 16968014  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 20154511 - 20154383
Alignment:
Q  40 gaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgttg 139  Q
    ||||||||||| |||||||||||| || ||||| ||||||||| ||||| |||  ||||  ||||||||||| |||| ||| ||||| || | ||| |||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttg 20154412  T
Q  140 tctgattcttttgagaagagatgtttggc 168  Q
    ||||||| |||  |||| |||||||||||    
T  20154411 tctgattgtttcaagaacagatgtttggc 20154383  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 20143639 - 20143500
Alignment:
Q  7 gaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaact 106  Q
    ||||||||| ||||||| | |||||||||| ||||||||||||| ||| |||||||| || ||| | ||||| ||| ||||||| |  ||||| |||| |    
T  20143639 gaaggagttaagatgattggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaatt 20143540  T
Q  107 tggagagacaatggtgaaaagacgacgttgttgtctgatt 146  Q
    ||||| || | ||| ||||| |||| ||| ||||||||||    
T  20143539 tggagtgatagtggcgaaaacacgatgttcttgtctgatt 20143500  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 20169865 - 20170010
Alignment:
Q  1 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 100  Q
    |||| ||||||| |||||||||| | |||||||||| ||||||||||||| ||| |||||||  || ||||| ||||| |||  ||| || |  |||||     
T  20169865 agaggcgaaggaattgagatgattggtggatttgaaacggaggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataaggctgagc 20169964  T
Q  101 acaacttggagagacaatggtgaaaagacgacgttgttgtctgatt 146  Q
    |||| ||| || || | ||||||||| |||||||| ||||||||||    
T  20169965 acaatttgaagtgatagtggtgaaaacacgacgtttttgtctgatt 20170010  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 39548162 - 39548117
Alignment:
Q  118 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 163  Q
    ||||||||| | || |||||||||||||||||| ||||||||||||    
T  39548162 tggtgaaaacatgatgttgttgtctgattctttggagaagagatgt 39548117  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 33097525 - 33097480
Alignment:
Q  118 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 163  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  33097525 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 33097480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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