View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_high_20 (Length: 472)

Name: NF16751_high_20
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_high_20
NF16751_high_20
[»] chr1 (9 HSPs)
chr1 (77-457)||(39178773-39179153)
chr1 (17-81)||(39178094-39178158)
chr1 (372-449)||(39173763-39173840)
chr1 (372-449)||(39169819-39169896)
chr1 (187-254)||(39169722-39169789)
chr1 (77-112)||(39169676-39169711)
chr1 (187-254)||(39173666-39173733)
chr1 (37-81)||(39168316-39168360)
chr1 (76-112)||(39173619-39173655)


Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 77 - 457
Target Start/End: Original strand, 39178773 - 39179153
Alignment:
Q  77 tacaaggaacctcccatgtacaaatcttccaaggttgtattacatttaacaatcacgtcatcaactttcagaattgtctcttcctcctccattggacctc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178773 tacaaggaacctcccatgtacaaatcttccaaggttgtattacatttaacaatcacgtcatcaactttcagaattgtctcttcctcctccattggacctc 39178872  T
Q  177 caccaaaaacctaaaggaaacaatattagtttcataataaaacaaagaagcataaccatcgaaaaagtgcaaattcaatacaaaagctattttaaagagg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178873 caccaaaaacctaaaggaaacaatattagtttcataataaaacaaagaagcataaccatcgaaaaagtgcaaattcaatacaaaagctattttaaagagg 39178972  T
Q  277 ataatgtggtttacagatcatcaagaatttctcaggttcatatatatagttcgctataaacatgatttacaataagacattaaggtgtagtttggtcaat 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178973 ataatgtggtttacagatcatcaagaatttctcaggttcatatatatagttcgctataaacatgatttacaataagacattaaggtgtagtttggtcaat 39179072  T
Q  377 gtagtgaagctgatttctttgcttcctaatacttttggtgttgttgattgatcatgaaaatgttaaccgagtgcacatatg 457  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39179073 gtagtgaagctgatttctttgcttcctaatacttttggtattgttgattgatcatgaaaatgttaaccgagtgcacatatg 39179153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 39178094 - 39178158
Alignment:
Q  17 atactcgtctcaaaaccaataaggtcttgaatctgaaaataaaggttaaaatataaactttacaa 81  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178094 atactcgtctcaaagccaataaggtcttgaatctgaaaataaaggttaaaatataaactttacaa 39178158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 39173763 - 39173840
Alignment:
Q  372 tcaatgtagtgaagctgatttctttgcttcctaatacttttggtgttgttgattgatcatgaaaatgttaaccgagtg 449  Q
    ||||| ||||||||||||| ||||| |||||||||||||||| | |||||||| ||||||||||||||||||| ||||    
T  39173763 tcaatatagtgaagctgatatcttttcttcctaatacttttgttattgttgatcgatcatgaaaatgttaacctagtg 39173840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 39169819 - 39169896
Alignment:
Q  372 tcaatgtagtgaagctgatttctttgcttcctaatacttttggtgttgttgattgatcatgaaaatgttaaccgagtg 449  Q
    ||||| ||||||||||||| ||||||  ||| |||||||||| | |||||||||||||||||||||||||||| ||||    
T  39169819 tcaatatagtgaagctgatatctttgtctcccaatacttttgttattgttgattgatcatgaaaatgttaacctagtg 39169896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 39169722 - 39169789
Alignment:
Q  187 ctaaaggaaacaatattagtttcataataaaacaaagaagcataaccatcgaaaaagtgcaaattcaa 254  Q
    ||||||||||||  || ||||| || |||||||||||||| |||||||||||||| || |||||||||    
T  39169722 ctaaaggaaacatcatcagttttatcataaaacaaagaagtataaccatcgaaaacgtacaaattcaa 39169789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 39169676 - 39169711
Alignment:
Q  77 tacaaggaacctcccatgtacaaatcttccaaggtt 112  Q
    ||||||||||||||| ||||||||||||||||||||    
T  39169676 tacaaggaacctcccgtgtacaaatcttccaaggtt 39169711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 39173666 - 39173733
Alignment:
Q  187 ctaaaggaaacaatattagtttcataataaaacaaagaagcataaccatcgaaaaagtgcaaattcaa 254  Q
    ||||||||||||  || ||||| || |||||||||||||| ||||||||||||||  | |||||||||    
T  39173666 ctaaaggaaacatcatcagttttatcataaaacaaagaagtataaccatcgaaaacttacaaattcaa 39173733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 39168316 - 39168360
Alignment:
Q  37 aaggtcttgaatctgaaaataaaggttaaaatataaactttacaa 81  Q
    |||| |||||| ||||||||||||||||||| | |||||||||||    
T  39168316 aagggcttgaagctgaaaataaaggttaaaaaacaaactttacaa 39168360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 39173619 - 39173655
Alignment:
Q  76 ttacaaggaacctcccatgtacaaatcttccaaggtt 112  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  39173619 ttacaaggaacttcccgtgtacaaatcttccaaggtt 39173655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University