View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_23 (Length: 424)
Name: NF16751_high_23
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 100 - 407
Target Start/End: Complemental strand, 15924801 - 15924494
Alignment:
| Q |
100 |
ttcataaaattaaaatggtagacttggataatgttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaact |
199 |
Q |
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| T |
15924801 |
ttcataaaattaaaatgttagacttgcataatgttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaact |
15924702 |
T |
|
| Q |
200 |
tttatcattcttccattgttaccatcatcatcttctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15924701 |
tttatcattcttccattgttaccatcatcatcttctggacctggaaaaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcgccctaa |
15924602 |
T |
|
| Q |
300 |
taggtttctttccattaagctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccatatacnnnnnnntcatcttttccatc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15924601 |
taggtttctttccattaagctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccatatacaaaaaaatcatcttttccatc |
15924502 |
T |
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| Q |
400 |
acctttct |
407 |
Q |
| |
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|||||||| |
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| T |
15924501 |
acctttct |
15924494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 133 - 375
Target Start/End: Complemental strand, 13116586 - 13116344
Alignment:
| Q |
133 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
232 |
Q |
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| T |
13116586 |
ttgtattcccaattctcctgctagtttacatttcagctggtcaagttcttttcctggcaatgaaactgttatcatccttccattattaccatcagtatct |
13116487 |
T |
|
| Q |
233 |
tctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaagctttacaccatata |
332 |
Q |
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||||| ||||||||||||||||||||||||| |||| ||||| || ||||||||||| ||| |||| ||||||| |||||||| ||||| | || | |
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| T |
13116486 |
tctggtcctggaagaaccaaaacaactccttcatcatgaacaccgcggaaatcacaatttaccataatgggtttctgtccattaatctttatctcgtaaa |
13116387 |
T |
|
| Q |
333 |
aatcagcttcttccaagtctacaaatgttaactttgctccata |
375 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
13116386 |
aatcagcctcttccaagtctacaaatgttaacttagctccata |
13116344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 133 - 375
Target Start/End: Complemental strand, 46011718 - 46011476
Alignment:
| Q |
133 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
232 |
Q |
| |
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||||||| |||||||| | | || ||| ||||||| ||||||||||||||||| || || |||| | ||| ||| |||||||| ||||||| | |||| |
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| T |
46011718 |
ttgtatatcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatct |
46011619 |
T |
|
| Q |
233 |
tctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaagctttacaccatata |
332 |
Q |
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||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||| || ||| ||||||| ||||||| |||||||||||| | |
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| T |
46011618 |
tctggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaa |
46011519 |
T |
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| Q |
333 |
aatcagcttcttccaagtctacaaatgttaactttgctccata |
375 |
Q |
| |
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||| | |||||||||| |||||||||||||||||||||||||| |
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| T |
46011518 |
aattaccttcttccaaatctacaaatgttaactttgctccata |
46011476 |
T |
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