View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_25 (Length: 414)
Name: NF16751_high_25
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_25 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 54225611 - 54225214
Alignment:
| Q |
8 |
tgaaatgaaataggtatctgtatgttaggtaaaataattgtatatacctcagagtgaccagtgatcaatttttgttggtgtcctcgcaggttnnnnnnnt |
107 |
Q |
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| T |
54225611 |
tgaaatgaaataggtatctgtatgttaggtaaaataattgtatatacctcagagtgaccagtgatcaatttttgttggtgtcctcacaggttaaaaaaat |
54225512 |
T |
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| Q |
108 |
acagcaagaaaagaaggttgaagttttggtggacaaagaactagggagcaactatgatagaatagaggttggggaaatgcttcaagtagctttgctttgc |
207 |
Q |
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| T |
54225511 |
acagcaagaaaagaaggttgaagttttggtggacaaagaactagggagcaactatgatagaatagaggttggggaaatgcttcaagtagctttgctttgc |
54225412 |
T |
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| Q |
208 |
acccaatatatgacagctcaccggccgaaaatgtccgaagtggtccggatgcttgaaggagatggacttgctgagaagtgggcatcgacacataattatg |
307 |
Q |
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| T |
54225411 |
acccaatatatgacagctcaccggccgaaaatgtccgaagtggtccggatgcttgaaggagatggacttgctgagaagtgggcatcgacacataattatg |
54225312 |
T |
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| Q |
308 |
gaagtaactgctggagccatagtcacagcaacaacagtagtagcaatagctcatctcgtcctaccactacttcaaaacatgatgaaaattttgatgat |
405 |
Q |
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| T |
54225311 |
gaagtaactgctggagccatagtcacagcaacaacagtagtagcaatagctcatctcgtcctaccactacttcaaaacatgatgaaaattttcatgat |
54225214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 60150 - 60214
Alignment:
| Q |
225 |
tcaccggccgaaaatgtccgaagtggtccggatgcttgaaggagatggacttgctgagaagtggg |
289 |
Q |
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| T |
60150 |
tcacaggccaaaaatgtcagaagtagttagaatgcttgaaggagatggacttgcagagaaatggg |
60214 |
T |
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