View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16751_high_32 (Length: 393)
Name: NF16751_high_32
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 40224460 - 40224141
Alignment:
| Q |
7 |
agataattctgttacaggtgaaactcaattattttaattaagattgtgattggttttctttgagtttggtttcattttacgtttttcgtgttgaaattga |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40224460 |
agattattctgttacaggtgaaactcaattattttaattaagattgtgattggttttctttgagtttggtttcattttacgtttttcgtgttgaaattga |
40224361 |
T |
|
| Q |
107 |
gacattattttgtttaatctttgtgggactcactcagggtctgcgacagaaacaagaaagagttgctcagaccaagatagttacatcctcgtaccagata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40224360 |
gacattattttgtttaatctttgtgggactcactcagggtctgcgacagaaacaagaaagagttgctcagaccaagatagttacatcctcgtaccagata |
40224261 |
T |
|
| Q |
207 |
atttttctggtaatttgcccaacactttgttttatgatttgaaatattctctannnnnnnaataaatagtgaatccttaatttcggctatgcttgggttt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
40224260 |
atttttctggtaatttgcccaacactttgttttatgatttgaaatattctcta-ttttttaataaatagtgaatccttaatttcggctatgcttggatct |
40224162 |
T |
|
| Q |
307 |
agggttttggcttcggagtgg |
327 |
Q |
| |
|
|| ||||||| || ||||||| |
|
|
| T |
40224161 |
agtgttttggttttggagtgg |
40224141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 40224128 - 40224095
Alignment:
| Q |
344 |
ggaagaattggcatgcaaattttagagtgctaag |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40224128 |
ggaagaattggcatgcaaattttagagtgctaag |
40224095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University