View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_33 (Length: 392)
Name: NF16751_high_33
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 44284267 - 44283895
Alignment:
| Q |
1 |
aaataaatcatttaatatgaaacagagagagtaattagaatctcatgcaacagttattttataatgctggtctaatttcccttttatgaaataaaaccaa |
100 |
Q |
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| T |
44284267 |
aaataaatcatttaatatgaaacagagagagtaattagaatctcatgcaacagttattttataatgctggtctaatttcccttttatgaaataaaaccaa |
44284168 |
T |
|
| Q |
101 |
gagcagaatatgaaattctaaatctaattatatcaataaatctcaaattttcaggacctcgacctcgaaagtgtttaacgatctaattcacgtatatacc |
200 |
Q |
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| T |
44284167 |
gagcagaatatgaaattctaaatctaattatatcaataaatctcaaattttcaggacctcgacctcgaaagtgtttaacgatctaattcacgtatatacc |
44284068 |
T |
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| Q |
201 |
aatttttatgagttttaattaccaatttcaatatctaaaacttgaaatcttaaaacaagaatatgatcttcaaaatattttagacggttctgattatatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44284067 |
aatttttatgagttttaattaccaatttcaatatctaaaacttgaaatcttaaaacaagaatatgatcttcaaaatattttagacggttctgattatatc |
44283968 |
T |
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| Q |
301 |
taatataatcaaatacatatacatggagtgggagttggaccccattttgcattattcgtatatggacatggta |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283967 |
taatataatcaaatacatatacatggagtgggagttggaccccattttgcattattcgtatatggacatggta |
44283895 |
T |
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