View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_35 (Length: 379)
Name: NF16751_high_35
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 35467288 - 35467651
Alignment:
| Q |
1 |
agagaatattgacaattgttttgattgccacatctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctgttggtcttgcatc |
100 |
Q |
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| T |
35467288 |
agagaatattgacaattgttttgattgccacatctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctgttggtcttgcatc |
35467387 |
T |
|
| Q |
101 |
tacaaatggctctttgtgcaaagggcttcacttgcacctgatgagcatccacagtgtccagtttgcaagcatgatatatctcacaccaaaatggtccctc |
200 |
Q |
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| T |
35467388 |
tacaaatggctctttgtgcaaagggcttcacttgcacctgatgagcatccacagtgtccagtttgcaagcatgatatatctcacaccaaaatggtccctc |
35467487 |
T |
|
| Q |
201 |
tctatggaagaggccagattctatcttctcgacgcggccgcaaccggaaggctactcttgaagatatttctataccaccaagaccacctgcttcagagat |
300 |
Q |
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| T |
35467488 |
tctatggaagaggccagactctatcttctcgacgcggccgcaacaggaaggctactcttgaagatatttctataccaccaagaccacctgcttcagagat |
35467587 |
T |
|
| Q |
301 |
tcaatctctactggaaacgccaacatcacctcaaagtgatcaacaagaacaagagaatcatgat |
364 |
Q |
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| T |
35467588 |
tcaatctctactggaaacgcgaacatcacctcaaagtgatcaacaagaacaagagaatgatgat |
35467651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 35473998 - 35474326
Alignment:
| Q |
10 |
tgacaattgttttgattgccacatctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctgttggtcttgcatctacaaatgg |
109 |
Q |
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| T |
35473998 |
tgacagttgttttgattgcaatatctgcttagactttgcacatgaaccagtagtcacactctgtggtcacctttactgctggtcctgtatttacaaatgg |
35474097 |
T |
|
| Q |
110 |
ctctttgtgcaaagggcttcacttgcacctgatgagcatccacagtgtccagtttgcaagcatgatatatctcacaccaaaatggtccctctctatggaa |
209 |
Q |
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|||||||||||||| || || |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |
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| T |
35474098 |
ctctttgtgcaaagtgcctctcttgcacctgatgagccaccacagtgtccagtttgcaaggatggcatatctcacaccaaaatggtccctctctatggca |
35474197 |
T |
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| Q |
210 |
gaggccagattctatct---tctcgacgcggccgcaaccggaaggctactcttgaagatatttctataccaccaagaccacctgcttcagagattcaatc |
306 |
Q |
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| T |
35474198 |
ggggccagaccctctctcgctgtgatcgcgacagtgacgcaaaacctacccttgaagatatttctataccgcctagaccacctgcatcagggattcaatc |
35474297 |
T |
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| Q |
307 |
tctactggaaacgccaacatcacctcaaa |
335 |
Q |
| |
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|||| ||| || | ||||||| ||||||| |
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| T |
35474298 |
tctattggcaatggcaacatcgcctcaaa |
35474326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 3663093 - 3662995
Alignment:
| Q |
13 |
caattgttttgattgccacatctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctgttggtcttgcatctacaaatggct |
111 |
Q |
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|||| |||||||||| ||||||||||||| || || ||||||| ||||| ||| | ||||||||||||| ||| ||| ||||||||||||| ||||| |
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| T |
3663093 |
caatggttttgattgtaacatctgcttagacttcgccaacgaaccggtagtcaccctttgtggccacctttactgctggccttgcatctacaagtggct |
3662995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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