View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16751_high_5 (Length: 680)
Name: NF16751_high_5
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 17 - 670
Target Start/End: Original strand, 14213069 - 14213718
Alignment:
| Q |
17 |
tttacagcagcatttaccccacttatacagatgtttgtggctgtgcttgatctttgtatattacaagaggaaatttatctaggaaggttagttctagtta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
14213069 |
tttacagcagcatttaccccacttatacagatgtttgtggctgtgcttgatctttgtatattacaagaggaaatttatctaggaaggttggttctactta |
14213168 |
T |
|
| Q |
117 |
tcactcttacttttccactttttatattgcattttccctgataaccttcctatctgcaataagcagtgttgtaggatcagtcttggttatttctggcatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213169 |
tcactcttacttttccactttttatattgcattttccctgataaccttcctatctgtaataagcagtgttgtaggatcagtcttggttatttctggcatg |
14213268 |
T |
|
| Q |
217 |
tatatgctcctatggggtaaaagtaaagagagggaacaatgtgccttgaaggacgctcaagaaaatcaaaaagatgaagaatgtcactaacaataccacc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213269 |
tatatgctcctatggggtaaaagtaaagagagggaacaatgtgccttgaaggacactcaagaaaatcaaaaagatgaagaatgtcactaacaataccacc |
14213368 |
T |
|
| Q |
317 |
aatcctactatgaataattttgagatcagtgatctctctatatactaaggccttagggggaacaagatttctcagatactgaagacttgttttacatcag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213369 |
aatcctactatgaataattttgagatcagtgatctctctatatactaaggccttagggggaacaagatttctcagatactgaagacttgttttacatcag |
14213468 |
T |
|
| Q |
417 |
tccaggagcagtagcaatgatattgtaacataatattaatagtgacaccttagagcaccagcatatccctagtattattaattataccttactacaagca |
516 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14213469 |
tccaggagcagtagcagtgaaattgtaacataatattaatagtgacaccttag----ccagcatatccctagtgttattaattataccttactacaagca |
14213564 |
T |
|
| Q |
517 |
tatcaaaaagaacgtcttgttttattgataccttctattgaaaatattgtagctaaatgattaattaatatcgaccatatcaatatcttatttatcacaa |
616 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213565 |
tatcaaaaagaaagtcttgttttattgataacttctattgaaaatattgtagctaaatgattaattaatatcgaccatatcaatatcttatttatcacaa |
14213664 |
T |
|
| Q |
617 |
aatatttagtccaagaacatagtactaaacacaaaatcgatcatttaagtatta |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213665 |
aatatttagtccaagaacatagtactaaacacaaaatcgatcatttaagtatta |
14213718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 51540258 - 51540346
Alignment:
| Q |
17 |
tttacagcagcatttaccccacttatacagatgtttgtggctgtgcttgatctttgtatattacaagaggaaatttatctaggaaggtt |
105 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||| | ||||||||| |||||| | | |||| || | |||||||| || |||||||||| |
|
|
| T |
51540258 |
tttactgcagcatttacccctcttttacagatatatgtggctgtccttgatttctctatactaaaggaggaaatatacttaggaaggtt |
51540346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University