View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_high_59 (Length: 285)

Name: NF16751_high_59
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_high_59
NF16751_high_59
[»] chr6 (3 HSPs)
chr6 (1-201)||(33010394-33010586)
chr6 (16-57)||(4749414-4749455)
chr6 (14-70)||(27434752-27434808)
[»] scaffold0022 (1 HSPs)
scaffold0022 (6-137)||(101072-101204)
[»] chr4 (5 HSPs)
chr4 (6-137)||(24091-24223)
chr4 (31-137)||(13914737-13914844)
chr4 (6-53)||(14288161-14288208)
chr4 (6-48)||(13914751-13914793)
chr4 (14-70)||(18066749-18066805)
[»] scaffold0289 (1 HSPs)
scaffold0289 (6-137)||(22132-22264)
[»] chr8 (25 HSPs)
chr8 (6-137)||(10895839-10895971)
chr8 (6-137)||(287297-287429)
chr8 (94-138)||(15605885-15605929)
chr8 (94-138)||(15614238-15614282)
chr8 (95-136)||(15624450-15624491)
chr8 (95-138)||(15637226-15637269)
chr8 (95-137)||(15605704-15605746)
chr8 (100-138)||(15637048-15637086)
chr8 (95-136)||(15648238-15648279)
chr8 (6-54)||(12167193-12167241)
chr8 (6-54)||(12411621-12411669)
chr8 (95-135)||(15637777-15637817)
chr8 (13-57)||(16291972-16292016)
chr8 (6-110)||(25113411-25113517)
chr8 (95-138)||(15637409-15637452)
chr8 (6-57)||(17895037-17895088)
chr8 (95-137)||(15605385-15605427)
chr8 (95-137)||(15613738-15613780)
chr8 (95-133)||(15613911-15613949)
chr8 (32-113)||(40267360-40267442)
chr8 (95-136)||(15606069-15606110)
chr8 (95-136)||(15614422-15614463)
chr8 (95-136)||(15637593-15637634)
chr8 (95-127)||(15624095-15624127)
chr8 (95-127)||(15647883-15647915)
[»] scaffold0018 (1 HSPs)
scaffold0018 (6-90)||(67256-67340)
[»] chr3 (7 HSPs)
chr3 (13-113)||(6440879-6440980)
chr3 (6-137)||(9270763-9270891)
chr3 (6-57)||(6445181-6445232)
chr3 (95-137)||(2766128-2766170)
chr3 (6-70)||(20919306-20919370)
chr3 (6-70)||(20928268-20928332)
chr3 (6-70)||(37197867-37197931)
[»] chr1 (6 HSPs)
chr1 (13-136)||(3832141-3832266)
chr1 (6-137)||(3417283-3417414)
chr1 (31-137)||(8314021-8314128)
chr1 (16-137)||(11440796-11440916)
chr1 (6-57)||(8314035-8314086)
chr1 (6-137)||(46514343-46514475)
[»] chr2 (2 HSPs)
chr2 (6-70)||(45049537-45049601)
chr2 (6-54)||(5243273-5243321)
[»] chr7 (1 HSPs)
chr7 (95-137)||(7946588-7946630)
[»] chr5 (2 HSPs)
chr5 (6-67)||(19205915-19205976)
chr5 (13-54)||(29857750-29857791)
[»] scaffold0191 (1 HSPs)
scaffold0191 (20-106)||(17054-17139)
[»] scaffold0003 (1 HSPs)
scaffold0003 (14-70)||(52555-52611)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 33010586 - 33010394
Alignment:
Q  1 ctcagttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaaca 100  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  33010586 ctcagttggctgatgaaaaataaataagtcatgatctattttgattaactaataaaatataattgaatcaacatcaattttaattggttggtgaaaaaca 33010487  T
Q  101 ttaaatgagatgagcaatatgaagatgtcacgtgtacaggtgtacagtgtactgttgatttttaggaagctatttgtttattataatagagatagagata 200  Q
    |||||||||||||||||||||||||||||||        |||| || |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  33010486 ttaaatgagatgagcaatatgaagatgtcac--------gtgtccaatgtactgttgatttttaggaagccgtttgtttattataatagagatagagata 33010395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 4749455 - 4749414
Alignment:
Q  16 aaaaataaatgagttatgatctattttgattggctaataaaa 57  Q
    |||||||||||||| ||||||| |||||||||||||| ||||    
T  4749455 aaaaataaatgagtcatgatctcttttgattggctaagaaaa 4749414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 27434808 - 27434752
Alignment:
Q  14 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 70  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  27434808 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 27434752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 101204 - 101072
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 104  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||    
T  101204 ttggcttatgaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaa 101105  T
Q  105 atgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||| ||  ||| |||||||| || ||||||    
T  101104 atgagaagaaaaatttgaagatgccatgtgtac 101072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 24091 - 24223
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 104  Q
    |||||| ||||||||||||||||| || ||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||    
T  24091 ttggctaatgaaaaataaatgagtcattatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaatcattaa 24190  T
Q  105 atgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||| ||| ||| |||||||| || ||||||    
T  24191 atgagaagagaaatttgaagatgccatgtgtac 24223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 13914737 - 13914844
Alignment:
Q  31 atgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaaatgagatgagcaatatgaagatgtc 129  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| |||||||||||| ||  ||| |||||||| |    
T  13914737 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaaatgagaagataaatttgaagatgcc 13914836  T
Q  130 acgtgtac 137  Q
    | ||||||    
T  13914837 atgtgtac 13914844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 14288161 - 14288208
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaat 53  Q
    |||||| ||||||||||||||||| |||||  ||||||||||||||||    
T  14288161 ttggctaatgaaaaataaatgagtcatgattcattttgattggctaat 14288208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 13914751 - 13914793
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattgg 48  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  13914751 ttggctaataaaaaataaatgagtcatgatctattttgattgg 13914793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 18066749 - 18066805
Alignment:
Q  14 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 70  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  18066749 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 18066805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 22132 - 22264
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 104  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| | ||||||| |||| |||||||  ||  ||||| ||| |||| ||||||| ||||||    
T  22132 ttggctaatgaaaaataaatgagtcatgatttattttgattgacaaataaaaaataaatgagtcatgatatattttgattggttgatgaaaaagcattaa 22231  T
Q  105 atgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||| |||  |||||||||| ||||||    
T  22232 atgagatgagaaattagaagatgtcatgtgtac 22264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 10895971 - 10895839
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaa 104  Q
    |||||| ||||||||||||||||| |||||| |||||||||| ||||||||| |||| |||||||  ||| || || ||| |||| |  |||||||||||    
T  10895971 ttggctaatgaaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagtcatgatccatattgattggttgataaaaaaacattaa 10895872  T
Q  105 atgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||| ||| |||||||| || ||||||    
T  10895871 atgagatgagaaatttgaagatggcatgtgtac 10895839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 287429 - 287297
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 104  Q
    |||||| || |||||||||||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| |||||||  |||||    
T  287429 ttggctaataaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagtattaa 287330  T
Q  105 atgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||| ||| ||| |||| ||| || ||||||    
T  287329 atgagaagagaaatttgaaaatgccatgtgtac 287297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 15605885 - 15605929
Alignment:
Q  94 aaaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 138  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  15605885 aaaaacattaaatgagatgagaaatatgaagatgtcacgtgtaca 15605929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 15614238 - 15614282
Alignment:
Q  94 aaaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 138  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  15614238 aaaaacattaaatgagatgagaaatatgaagatgtcacgtgtaca 15614282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 15624450 - 15624491
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 136  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  15624450 aaaacattaaatgagatgagaaatatgaagatgtcacgtgta 15624491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 15637226 - 15637269
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 138  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  15637226 aaaacattaaatgagatgagaaatatgaagatgacacgtgtaca 15637269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 15605704 - 15605746
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  15605704 aaaacattaaatgagatgagaaatatgaagatatcacgtgtac 15605746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 15637048 - 15637086
Alignment:
Q  100 attaaatgagatgagcaatatgaagatgtcacgtgtaca 138  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  15637048 attaaatgagatgagaaatatgaagatgtcacgtgtaca 15637086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 15648238 - 15648279
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 136  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  15648238 aaaacattaaatgagatgagaaatatgaagatgtcaggtgta 15648279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 12167193 - 12167241
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 54  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  12167193 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12167241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 12411621 - 12411669
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 54  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  12411621 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12411669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 15637777 - 15637817
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgt 135  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  15637777 aaaacattaaatgagatgagaaatatgaagatatcacgtgt 15637817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 16292016 - 16291972
Alignment:
Q  13 atgaaaaataaatgagttatgatctattttgattggctaataaaa 57  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  16292016 atgaaaaataaatgagtcatgatccattttgattggataataaaa 16291972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 25113411 - 25113517
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatcta--ttttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacatt 102  Q
    |||||| ||||||||||||||||| ||||||||  |||||||||| ||| || |||||| |||||||  ||| ||||||||| | || |  |||||||||    
T  25113411 ttggctaatgaaaaataaatgagtcatgatctattttttgattggttaa-aatatataagtgagtcataatctattttaattggatgataaaaaaacatt 25113509  T
Q  103 aaatgaga 110  Q
    ||||||||    
T  25113510 aaatgaga 25113517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 15637409 - 15637452
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 138  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||    
T  15637409 aaaacattaaatgagatgagaaatattaagatgtcacatgtaca 15637452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 17895037 - 17895088
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 57  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||| ||||    
T  17895037 ttggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaa 17895088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 15605385 - 15605427
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  15605385 aaaacattaaatgagatgagaaatatgaagatggcacatgtac 15605427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 15613738 - 15613780
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  15613738 aaaacattaaatgagatgagaaatatgaagatggcacatgtac 15613780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 15613911 - 15613949
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgt 133  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  15613911 aaaacattaaatgagatgagaaatatgtagatgtcacgt 15613949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 40267360 - 40267442
Alignment:
Q  32 tgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaaatgagatga 113  Q
    ||||| ||||||||||||||||||||  ||| ||| |||| ||| ||||| ||| |||| | ||||| |||||||||||||||    
T  40267360 tgatccattttgattggctaataaaaagtaaatgattcaatatctattttgattggttgataaaaaagcattaaatgagatga 40267442  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 15606069 - 15606110
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 136  Q
    |||||||||||||||||||| ||||||||||| |||| ||||    
T  15606069 aaaacattaaatgagatgagaaatatgaagatatcacatgta 15606110  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 15614422 - 15614463
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 136  Q
    |||||||||||||||||||| ||||||||||| |||| ||||    
T  15614422 aaaacattaaatgagatgagaaatatgaagatatcacatgta 15614463  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 15637593 - 15637634
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 136  Q
    |||||||||||||||||||| ||||| |||||||||| ||||    
T  15637593 aaaacattaaatgagatgagaaatattaagatgtcacatgta 15637634  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 15624095 - 15624127
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatg 127  Q
    |||||||||||||||||||| ||||||||||||    
T  15624095 aaaacattaaatgagatgagaaatatgaagatg 15624127  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 15647883 - 15647915
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatg 127  Q
    |||||||||||||||||||| ||||||||||||    
T  15647883 aaaacattaaatgagatgagaaatatgaagatg 15647915  T

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Target: scaffold0018 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 67256 - 67340
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttg 90  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||  ||| ||||||||| ||||    
T  67256 ttggctaatgaaaaataaatgagttatgatccattttgatttgctaataaaaaataaatgagtcatgatccattttaattggttg 67340  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 6440879 - 6440980
Alignment:
Q  13 atgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtg-aaaaacattaaatgagat 111  Q
    ||||||||||||||||| |||||  |||||||||||| ||||||| ||||||||||||   |  ||||| ||| |||| || ||||||||||||||||||    
T  6440879 atgaaaaataaatgagtcatgattcattttgattggcaaataaaaaataattgagtcatggtatattttgattggttgatgaaaaaacattaaatgagat 6440978  T
Q  112 ga 113  Q
    ||    
T  6440979 ga 6440980  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 9270763 - 9270891
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 104  Q
    |||||| ||||||||||||||||| ||||| |||||| |||||| ||||||    || |||||||  ||  ||||| ||| |||| ||||||| ||||||    
T  9270763 ttggctaatgaaaaataaatgagtcatgatttattttaattggcaaataaa----aaatgagtcattatatattttgattggttgatgaaaaagcattaa 9270858  T
Q  105 atgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||| |||  ||||||| || ||||||    
T  9270859 atgagatgagaaattagaagatgccatgtgtac 9270891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 6445181 - 6445232
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 57  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||| ||||    
T  6445181 ttggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaa 6445232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 2766128 - 2766170
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||||||||||||  |||||||||||||||| |||||    
T  2766128 aaaacattaaatgagatgaagaatatgaagatgtcacatgtac 2766170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 20919370 - 20919306
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 70  Q
    ||||||| |||||| |||||| || ||||   |||||||||||||||||||| |||| |||||||    
T  20919370 ttggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtca 20919306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 20928332 - 20928268
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 70  Q
    ||||||| |||||| |||||| || ||||   |||||||||||||||||||| |||| |||||||    
T  20928332 ttggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtca 20928268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 37197931 - 37197867
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 70  Q
    |||||||||||||| |||||| || ||||   ||||||||||| |||||||| |||| |||||||    
T  37197931 ttggctgatgaaaactaaatgtgtcatgaatcattttgattggttaataaaaaataaatgagtca 37197867  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 3832266 - 3832141
Alignment:
Q  13 atgaaaaataaatgagttat-gatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaaatgaga 110  Q
    ||||||||||||||||| || |||| | ||||||||||||||||||  ||| ||| |||| ||| ||||| ||| |||| | ||||||||||||||||||    
T  3832266 atgaaaaataaatgagtcattgatccaatttgattggctaataaaaagtaaatgattcaatatctattttgattggttgatagaaaaacattaaatgaga 3832167  T
Q  111 tgagcaatatgaagatgtcacgtgta 136  Q
    |||  |  ||||||||||||| ||||    
T  3832166 tgaagagcatgaagatgtcacatgta 3832141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 3417414 - 3417283
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaa-acattaa 104  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||| || ||   |||||||| |   ||||| ||| |||| | ||||  ||||||    
T  3417414 ttggctgatgaaaaataaatgagtcatgatccattttgattgactaatagaaaatggatgagtcaataaacattttgattggttgataaaaatgcattaa 3417315  T
Q  105 atgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||| | ||||||||||||||| ||||||    
T  3417314 atgagatg-gaaatatgaagatgtcatgtgtac 3417283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 8314021 - 8314128
Alignment:
Q  31 atgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaaatgagatgagcaatatgaagatgtc 129  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| |  |||||||||||||||||  || ||| ||||||||||    
T  8314021 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgataaaaaaacattaaatgagaaaagaaatttgaagatgtc 8314120  T
Q  130 acgtgtac 137  Q
    | ||||||    
T  8314121 atgtgtac 8314128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 11440916 - 11440796
Alignment:
Q  16 aaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaa-acattaaatgagatgag 114  Q
    |||||||||||||| |||||| |||||||||| ||||||||| |||| ||||| || ||| ||||| ||| |||  | ||||  |||||||| |||||||    
T  11440916 aaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagttaagatccattttgattggttaataaaaatgcattaaattagatgag 11440817  T
Q  115 caatatgaagatgtcacgtgtac 137  Q
      |||||||||||||| ||||||    
T  11440816 --atatgaagatgtcatgtgtac 11440796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 8314035 - 8314086
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 57  Q
    |||||| || |||||||||||||| |||||||||||||||||| | ||||||    
T  8314035 ttggctaataaaaaataaatgagtcatgatctattttgattggttgataaaa 8314086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 46514475 - 46514343
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 104  Q
    |||||| ||||||||||||||| | || ||  |||||||||||  |||||||  ||| ||||||   ||  ||||| ||| |||| ||||||| ||||||    
T  46514475 ttggctaatgaaaaataaatgaatcatcattcattttgattggtaaataaaaagtaaatgagtcgtgatatattttgattggttgatgaaaaaacattaa 46514376  T
Q  105 atgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||| |||  ||||||| || ||||||    
T  46514375 atgagatgagaaattagaagatgccatgtgtac 46514343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 45049601 - 45049537
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 70  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||  ||| |||||||    
T  45049601 ttggctaatgaaaaataaatgagtcatgatccattttgattggctaataaaaattaaatgagtca 45049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 5243273 - 5243321
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 54  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  5243273 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 5243321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 7946588 - 7946630
Alignment:
Q  95 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 137  Q
    |||||||||||||||||||  |||||||||||||||| |||||    
T  7946588 aaaacattaaatgagatgaagaatatgaagatgtcacatgtac 7946630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 19205915 - 19205976
Alignment:
Q  6 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgag 67  Q
    |||||| |||||||||| |||||| |||||| |||| |||||||||||| || |||| ||||    
T  19205915 ttggctcatgaaaaatagatgagtcatgatccatttagattggctaatataaaataagtgag 19205976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 29857791 - 29857750
Alignment:
Q  13 atgaaaaataaatgagttatgatctattttgattggctaata 54  Q
    ||||||||||||||||| |||||| ||||||||||| |||||    
T  29857791 atgaaaaataaatgagtcatgatccattttgattggataata 29857750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 17054 - 17139
Alignment:
Q  20 ataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtg-aaaaacattaaat 106  Q
    |||||| ||| |||||||||||| ||||| |||||||| |||| |||||||  ||| ||||| ||| |||| || |||||||||||||    
T  17054 ataaataagtcatgatctattttaattggttaataaaaaataaatgagtca--atctattttgattggttgatgaaaaaacattaaat 17139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 52555 - 52611
Alignment:
Q  14 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 70  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  52555 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 52611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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