View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_high_60 (Length: 283)

Name: NF16751_high_60
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_high_60
NF16751_high_60
[»] chr3 (2 HSPs)
chr3 (148-283)||(27744806-27744941)
chr3 (9-75)||(27745013-27745079)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 148 - 283
Target Start/End: Complemental strand, 27744941 - 27744806
Alignment:
Q  148 tgttgtgtagttaaatacttaacttgtggctaagtgatttaatatcatttgtgaaagccttaagcatgggtgtttgagaagatccttggtattctctgat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27744941 tgttgtgtagttaaatacttaacttgtggctaagtgatttaatatcatttgtgaaagccttaagcatgggtgtttgagaagatccttggtattctctgat 27744842  T
Q  248 ttggaaggtcaccataggcaagctctctttttctct 283  Q
    |||||||||||||||||||| |||||||||||||||    
T  27744841 ttggaaggtcaccataggcatgctctctttttctct 27744806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 27745079 - 27745013
Alignment:
Q  9 gatatgaagaatcggtttgggtgtatgcacgaggcaaattgaacaatcagtaaaaatagccataatg 75  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27745079 gataagaagaatcggtctgggtgtatgcacgaggcaaattgaacaatcagtaaaagtagccataatg 27745013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University