View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_high_68 (Length: 254)

Name: NF16751_high_68
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_high_68
NF16751_high_68
[»] chr3 (6 HSPs)
chr3 (15-254)||(6068785-6069024)
chr3 (31-253)||(6091399-6091623)
chr3 (31-243)||(6080328-6080542)
chr3 (31-209)||(6113177-6113357)
chr3 (31-253)||(6120025-6120249)
chr3 (53-253)||(6073299-6073499)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 6069024 - 6068785
Alignment:
Q  15 aaaatgaatacatgatatagattatgtaatattctaaaacttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctact 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6069024 aaaatgaatacatgatatagattatgtaatattctaaaacttttgtttactctcttggttctttcactaaatacaaaatcatttgggattaagttctact 6068925  T
Q  115 tgcaactccggtctaccacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacatt 214  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6068924 tgcaactccggtctaccacacctacaaagtcttccgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacatt 6068825  T
Q  215 ttctattaccactcgcttcaatgaaaaaagagaataaaag 254  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  6068824 ttctattaccacccgcttcaatgaaaaaagagaataaaag 6068785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 31 - 253
Target Start/End: Original strand, 6091399 - 6091623
Alignment:
Q  31 atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct 128  Q
    |||||||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  6091399 atagattatgtaatattctaaaagacttttgtgtcctgtcttggttctttcactaaatacaaaatcactagggattaagttgtacttgcaactccggtct 6091498  T
Q  129 accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattt-tctattaccact 227  Q
    || |||||| || || ||  ||||||||||| |  ||||| ||||||||||||||  |||||||||||||||||||||||| ||||| ||| |||||||     
T  6091499 acgacacctgcagagcctattgatacacttcgcaaccaaagaagatgggcacatatgttttggacaatcagaatctctaaagcatttatct-ttaccacc 6091597  T
Q  228 cgcttcaatgaaaaaagagaataaaa 253  Q
    | ||||||||||||||||||||||||    
T  6091598 cccttcaatgaaaaaagagaataaaa 6091623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 6080328 - 6080542
Alignment:
Q  31 atagattatgtaatattctaaa-actttt-gtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct 128  Q
    |||||||||||||||||||||| |||||| ||  |||||||||  |||||||||||||||||||||| ||||||||||||  |||||||||| | |||||    
T  6080328 atagattatgtaatattctaaagactttttgtgcactctcttgactctttcactaaatacaaaatcaattgggattaagtcttacttgcaaccctggtct 6080427  T
Q  129 accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttctattaccactc 228  Q
    | ||||| |||||   || |||| |||||||||| ||||||| ||||| ||||||  |||||||||||||||||||||||||||| |||||||||||| |    
T  6080428 aacacacttacaattacttctgagacacttcacgaccaaataggatggacacatattttttggacaatcagaatctctaaaacatcttctattaccaccc 6080527  T
Q  229 gcttcaatgaaaaaa 243  Q
    |||| ||| ||||||    
T  6080528 gctttaataaaaaaa 6080542  T

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Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 6113357 - 6113177
Alignment:
Q  31 atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct 128  Q
    |||||||| ||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |    
T  6113357 atagattaggtaatattctaaaagacttttgtgtattctcttggttctttcactaaatacaaaatcacttgggattaagttgtacttgcaaccccggttt 6113258  T
Q  129 accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaa 209  Q
    || |||||| ||  |  |  ||| |||||||    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  6113257 acgacacctgcagtgctttttgaaacacttcgtaaccaaataagatgggcacataacttttggacaatcagaatctctaaa 6113177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 6120249 - 6120025
Alignment:
Q  31 atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct 128  Q
    |||||||||||||||||||||||  ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||  ||||| |    
T  6120249 atagattatgtaatattctaaaagacttttgtgtactctcctggttctttcagtaaatacaaaatcacttgggattaagttgtatttgcaatcccggttt 6120150  T
Q  129 accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacat-tttctattaccact 227  Q
    || ||| || || ||  |  ||||||||||| |  | ||| ||||||| |||||| |||||||||||||||||||| |||| ||| | ||| |||||       
T  6120149 acgacagctgcagagctttttgatacacttcgcaactaaagaagatggacacatatattttggacaatcagaatctttaaagcatctatct-ttaccgtg 6120051  T
Q  228 cgcttcaatgaaaaaagagaataaaa 253  Q
    | ||||||||||||||||||||||||    
T  6120050 cccttcaatgaaaaaagagaataaaa 6120025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 6073299 - 6073499
Alignment:
Q  53 acttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtctaccacacctacaaagtctgctgat 152  Q
    |||||||| |||||||||||||||| ||| | ||||||||||||||||||||| ||| |  ||  |||| ||||||| ||||  || |||  | | |||     
T  6073299 acttttgtgtactctcttggttcttgcacaacatacaaaatcacttgggattaggtttttatttgaactacggtctaacacatttataaataccgttgac 6073398  T
Q  153 acacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttctattaccactcgcttcaatgaaaaaagagaataaa 252  Q
    |||||||||| |||||||||| || ||||||  ||||| |||||||  |||||| ||||||||||||  ||||  || ||||||||||||||||||||||    
T  6073399 acacttcacgaccaaataagacggacacatattttttgcacaatcatcatctctgaaacattttctacgaccaaccgtttcaatgaaaaaagagaataaa 6073498  T
Q  253 a 253  Q
    |    
T  6073499 a 6073499  T

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