View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_76 (Length: 243)
Name: NF16751_high_76
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_76 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 6068481 - 6068270
Alignment:
| Q |
4 |
cgaattattattaaatatatatcaatgtgtcgtgtttgtcccttcaacatatttagtaaaaagaaagaataaaaaatttaccaatcataagagtttatta |
103 |
Q |
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| T |
6068481 |
cgaattattattaaatatatatcgatgtgtcgtgtttgtcccttcaacatatttagtaaaaa-------------atttaccaatcataagagtttatta |
6068395 |
T |
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| Q |
104 |
tatttttaataaatttcaaaaatcgtataacctttgatggctgaaagaggaaaaatcacaaaagataaatgataagcacgaaaatggtggttattatctt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6068394 |
tatttttaataaatttcaaaaatcgtataacctttgatggctgaaagaggaaaaatcacaaaagataaatgataagcacgaaaatggtggttattatctt |
6068295 |
T |
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| Q |
204 |
taaattatccccttaatataatgat |
228 |
Q |
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||||||||||||||||||||||||| |
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| T |
6068294 |
taaattatccccttaatataatgat |
6068270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 6080843 - 6081067
Alignment:
| Q |
5 |
gaattattattaaatatatatcaatgtgtcgtgtttgtcccttcaacatatttagtaaaaagaaagaataaaaaatttaccaatcataagagtttattat |
104 |
Q |
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|||| |||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||| ||| | |
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| T |
6080843 |
gaatcattattaaatgtatatcaatgtgttgtgt--gtcccttcaacacatttagtaaaaagaaagattaaaaaaattaccaatcataaaagtacatttt |
6080940 |
T |
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| Q |
105 |
atttttaataaatttcaaaaatcgtataacctttgatggctgaaagaggaaaaatcacaaaagataaatgataagcacgaa---aatggtggttattatc |
201 |
Q |
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| T |
6080941 |
atttttattaaatttcaaaaattgtataagctttgatggctaaaagagggaaaatcacaaaagataaatgataaccacaaaattaatgttggttattatc |
6081040 |
T |
|
| Q |
202 |
tttaaattatccccttaatataatgat |
228 |
Q |
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| T |
6081041 |
tttgaattatccccttaatataatgat |
6081067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 6073971 - 6074193
Alignment:
| Q |
10 |
attattaaatatatatcaatgtgtcgtgtttgtcccttcaacatatttagtaaaaagaaag----aataaaaaatttaccaatcataagagtttattata |
105 |
Q |
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|||||||||| |||||| |||| | |||||||||||||||||| | |||||||||||||| | ||||||||| |||||||||||||||| |||||| |
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| T |
6073971 |
attattaaatgtatatccatgtcttgtgtttgtcccttcaacacacttagtaaaaagaaaacttaattaaaaaattgaccaatcataagagttcattata |
6074070 |
T |
|
| Q |
106 |
tttttaataaatttcaaaaatcgtataacctttgatggctgaaagaggaaaaatcacaaaagataaatgataagcacgaaaatggtggttattatcttta |
205 |
Q |
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| T |
6074071 |
tttttaataaatttcaaaaattgtataagctttgatgaccgagaaagggaaaatctcaaaatatgaataataacctaataaatgtggattattatcttta |
6074170 |
T |
|
| Q |
206 |
aattatccccttaatataatgat |
228 |
Q |
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| T |
6074171 |
aattatcaacttaatataatgat |
6074193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 6119732 - 6119658
Alignment:
| Q |
5 |
gaattattattaaatatatatcaatgtgtcgtgtttgtcccttcaacatatttagtaaaaagaaagaataaaaaa |
79 |
Q |
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| T |
6119732 |
gaatcattattaaatgtatatcaatgtgtcgtgtttgtcccttcaatatacttagtaaaaagaaatattaaaaaa |
6119658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 6091920 - 6091989
Alignment:
| Q |
10 |
attattaaatatatatcaatgtgtcgtgtttgtcccttcaacatatttagtaaaaagaaagaataaaaaa |
79 |
Q |
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| T |
6091920 |
attattaaatgtatatcaatgtgtcgtgtttgtcccttcaatatacttaataaaaagaaatattaaaaaa |
6091989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 6112519 - 6112450
Alignment:
| Q |
10 |
attattaaatatatatcaatgtgtcgtgtttgtcccttcaacatatttagtaaaaagaaagaataaaaaa |
79 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||| | ||||||| |
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| T |
6112519 |
attattaaatgcatatcaatgtgtcttgtttgtcccttcaatatacttagtaaaaagaaatattaaaaaa |
6112450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 6112852 - 6112778
Alignment:
| Q |
5 |
gaattattattaaatatatatcaatgtgtcgtgtttgtcccttcaacatatttagtaaaaagaaagaataaaaaa |
79 |
Q |
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|||| ||||||| || ||||||||||||| |||||||||||| || ||| |||||||||||||| | ||||||| |
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| T |
6112852 |
gaatcattattagatgcatatcaatgtgtcttgtttgtccctttaatatacttagtaaaaagaaatattaaaaaa |
6112778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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