View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_77 (Length: 240)
Name: NF16751_high_77
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_77 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 34310234 - 34310022
Alignment:
| Q |
7 |
tcgaagaaaatcagttacaaacctcattttatatcttccttcaaatcagacaaggtatgaaaaaagagattttccacgccaaatctcgcaacattattag |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
34310234 |
tcgatgaaaatcagttacaaacctcattttatatcttccttcaaatcagacaaggtatggaaaaagagattctccacgccaaatctcgcaacattattag |
34310135 |
T |
|
| Q |
107 |
ttttaaaatgagtcgtaaaatgtnnnnnnnngaacattactaacattaaggatctgtatttataggaggtgaaaatttaaaacaggcgaggaaattactt |
206 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34310134 |
ttttaaaatgagtcgtaaaatgtaaaaaaaagaacattactaacattaaggatcagtatttataggaggtgaaaatttaaaacaggcgaggaaattactt |
34310035 |
T |
|
| Q |
207 |
aa-gacaaagctg |
218 |
Q |
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|| |||||||||| |
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| T |
34310034 |
aaggacaaagctg |
34310022 |
T |
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