View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_8 (Length: 624)
Name: NF16751_high_8
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Complemental strand, 40093298 - 40092880
Alignment:
| Q |
20 |
ggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaaagctgaacctgaagtcca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093298 |
ggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaaagctgaacctgaagtcca |
40093199 |
T |
|
| Q |
120 |
actgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093198 |
actgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactcc |
40093099 |
T |
|
| Q |
220 |
ctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaattatgaacatttttaaaaggaacatccatc |
319 |
Q |
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| T |
40093098 |
ctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaaaaataaattatgaacatttttagaaggaacatccatc |
40092999 |
T |
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| Q |
320 |
atcaactctccctccnnnnnnnnnnnnnnnnnnntcaacgatcaactcatgttttaacttgttttaaaatcaacctcaacttcatttgagtttcaataac |
419 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40092998 |
atcaactctccct-aaaaaaaataaaaaaaaaaatcaatgatcaactcatgttttaacttgttttaaaatcaacctcgacttcatttgagtttcaataac |
40092900 |
T |
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| Q |
420 |
acagggtctttgagagtttc |
439 |
Q |
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||||| ||||||||| |||| |
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| T |
40092899 |
acaggctctttgagactttc |
40092880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 28 - 332
Target Start/End: Complemental strand, 40062633 - 40062329
Alignment:
| Q |
28 |
ttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaaagctgaacctgaagtccaactgttaa |
127 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
40062633 |
ttagatatagtaatgagagaaatctttggaggagcaagccattctatgcataattggaaactacaaacacgaaaatctgaacctgaagtccaactgttag |
40062534 |
T |
|
| Q |
128 |
actcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactccctaagaat |
227 |
Q |
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| T |
40062533 |
actcagcagatcaatttggttatttccataaattactttgattgggatgtccacattaagcttaggtttgtctttgttcccggtgtgactccctaagaat |
40062434 |
T |
|
| Q |
228 |
tcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaattatgaacatttttaaaaggaacatccatcatcaactc |
327 |
Q |
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| T |
40062433 |
tcatcaataatatcatcgaaagttataatttaataattcaagaacttaatggaaacaataaattatgaacatttttggacggaacatccaagatcaactc |
40062334 |
T |
|
| Q |
328 |
tccct |
332 |
Q |
| |
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||||| |
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| T |
40062333 |
tccct |
40062329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 436 - 612
Target Start/End: Complemental strand, 40088077 - 40087902
Alignment:
| Q |
436 |
tttcaaaatataaaaaccatatccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
535 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40088077 |
tttcaaaatataaaaaccatatccttgtgaataa-ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
40087979 |
T |
|
| Q |
536 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
612 |
Q |
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| T |
40087978 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
40087902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 359 - 612
Target Start/End: Complemental strand, 40062311 - 40062055
Alignment:
| Q |
359 |
gatcaactcatgtttt-aacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagggtctttgagagtttcaaaatataaaaaccata- |
456 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||| || | ||||||| |
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| T |
40062311 |
gatcaactcatatttttaacttgttttaaaatcaaccttgacttcatttgagtttcaataatacaggctctttgagactttcaaaacattagaaccataa |
40062212 |
T |
|
| Q |
457 |
--tccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatca |
554 |
Q |
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| T |
40062211 |
aattctagtgaataa-ttacctgcaagctttccgtttacgaaagcatgaagggcatggccgagtgattcaatgtgaagtacagtttgagaaccaagatca |
40062113 |
T |
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| Q |
555 |
tccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
612 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40062112 |
tccttaagatcaacgcttcaaaagaatataatagaagtgttatcgagaagtacagaat |
40062055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 471 - 608
Target Start/End: Complemental strand, 40080330 - 40080194
Alignment:
| Q |
471 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgc |
570 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| |||||||| || |
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| T |
40080330 |
ttaccagcaagcttgccgtttatgaaagcatgaagggcatggccaagtgattcaatgtgcaggacagtttgagaaccgggatcatccgcaagatcaaggc |
40080231 |
T |
|
| Q |
571 |
ttcaaaagaatacaatagaagtgttatcgagaagtaca |
608 |
Q |
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|| |||| ||||||| |||||||||||| ||||||||| |
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| T |
40080230 |
tttaaaa-aatacaagagaagtgttatcaagaagtaca |
40080194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 40080912 - 40080793
Alignment:
| Q |
73 |
atgcataattggaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgg |
172 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| | || ||| || |
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| T |
40080912 |
atgcatatttagaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagtagatcaattttgttctttccggaaactagtgcgattgg |
40080813 |
T |
|
| Q |
173 |
gatgtcctcattaagcttag |
192 |
Q |
| |
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||||||| |||||||||||| |
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| T |
40080812 |
gatgtccacattaagcttag |
40080793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 40080982 - 40080933
Alignment:
| Q |
28 |
ttagatatagtaatgagagaaatcattgggggagcaagcaattctatgca |
77 |
Q |
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||||||||||||||||||||||||| || ||||||||| | |||||||| |
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| T |
40080982 |
ttagatatagtaatgagagaaatcactgaaggagcaagccagtctatgca |
40080933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 542
Target Start/End: Original strand, 22013454 - 22013525
Alignment:
| Q |
471 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttga |
542 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||||||||| || |||||||||||||| |||| |||| |
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| T |
22013454 |
ttaccagcaagcttcccatttacaaaagcatgaagggcatggccaagggattcaatgtgaagaacaggttga |
22013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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