View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16751_high_87 (Length: 225)
Name: NF16751_high_87
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_87 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 15449433 - 15449639
Alignment:
| Q |
1 |
atgtagaaaaattagtagtgggaattctccaccttcaataggagttgcaatcaaaagagactttggtggtggaactgatcatcaacatgtagaaaacttt |
100 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
15449433 |
atgtagaaaaagtaaaagtgggaattctccaccttcaataggagtagcaatcaagagagattttggtggtggaactgatca---acatatagaaaacttt |
15449529 |
T |
|
| Q |
101 |
agcacacatgaattatataggatatcatataatagaagagtaaataaaaattgtaccattttgtgcatgtgaacaagaatcaacccttagtagcttagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15449530 |
agcacacatgaattatataggatatcatataatagaagagtaaataaaaattgtaccattttgtgcatgtgaacaagaatcaacccttagtagcttagtg |
15449629 |
T |
|
| Q |
201 |
gtataattac |
210 |
Q |
| |
|
||||| |||| |
|
|
| T |
15449630 |
gtatagttac |
15449639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 15443835 - 15443915
Alignment:
| Q |
1 |
atgtagaaaaattagtagtgggaattctccaccttcaataggagttgcaatcaaaagagactttggtggtggaactgatca |
81 |
Q |
| |
|
|||||| |||| ||| ||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
15443835 |
atgtaggaaaagtagaagtggaaattctccaccttcaataggtgtggcaatcaaaagagatcttggtggtggaactgatca |
15443915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University