View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_9 (Length: 623)
Name: NF16751_high_9
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Original strand, 53754205 - 53754776
Alignment:
| Q |
11 |
actgagatgaataaagattacggtgacagtaattttttataaatgactcagttattacgggacggagcgagtataaaagaaggcaagttaattaattgta |
110 |
Q |
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||||| |||| | |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53754205 |
actgaaatgagtcaagattactgtgacaataattttttataaatgactcagttattatgggacggagcgagtataaaagaaggcaagttaattaattgta |
53754304 |
T |
|
| Q |
111 |
tcataccgtatggttggacttgtaccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53754305 |
tcataccgtatggttggacttgtaccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatc |
53754404 |
T |
|
| Q |
211 |
ctaatgcctccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53754405 |
ctaatgcctccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagt |
53754504 |
T |
|
| Q |
311 |
tcctccctggtgggatggggcatgttgttcccgaaacaccatcttcgaatgagttccttctctgctggatcccattcctgcaatttcattcaattaaatc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53754505 |
tcctccctggtgggatggggcatgttgttcccgaaacaccatcttcgaatgagttccttctctgctggatcccattcctgcaatttcattcaattaaatc |
53754604 |
T |
|
| Q |
411 |
cacattccttatatggattgtcacattgccatatctacagtctaccactcaattcatgtaatagtatttaaaaatctaccactaaatgtgccataaaata |
510 |
Q |
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| T |
53754605 |
cacattccttaaatggattgtcacattgccatatctacagtctaccactcaattcatgtaatagtatttaaaaatctaccactaaatgtgccatataata |
53754704 |
T |
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| Q |
511 |
aaagctttaact-atatggtcatttttggggtacaattatatgtcatttaatggagaattatatatattttt |
581 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53754705 |
aaagctttaactaatatggtcatttttggggtacaattatatgtcatttaatggagaattatatatattttt |
53754776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 9218072 - 9218039
Alignment:
| Q |
51 |
aaatgactcagttattacgggacggagcgagtat |
84 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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| T |
9218072 |
aaatgactcagttattacgggacggagggagtat |
9218039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 47496112 - 47496072
Alignment:
| Q |
43 |
ttttttataaatgactcagttattacgggacggagcgagta |
83 |
Q |
| |
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||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
47496112 |
ttttttacaaatgactcagttattacaggacggagggagta |
47496072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 114 - 390
Target Start/End: Original strand, 8571696 - 8571972
Alignment:
| Q |
114 |
taccgtatggttggacttgtaccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatccta |
213 |
Q |
| |
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|||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| || ||| ||| || || |||||||| || ||||| || || ||| |
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| T |
8571696 |
taccgtgtggttggacttgtaccaatctccaatgaggacagtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattcta |
8571795 |
T |
|
| Q |
214 |
atgcctccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcc |
313 |
Q |
| |
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|| ||||||||||||||||| ||||| || ||||| |||||||| || || || || || ||||||||||| || |||||||| || |||||||||||| |
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| T |
8571796 |
attcctccaaaaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatcttttacttgaagtatgtatgtgaagttct |
8571895 |
T |
|
| Q |
314 |
tccctggtgggatggggcatgttgttcccgaaacaccatcttcgaatgagttccttctctgctggatcccattcctg |
390 |
Q |
| |
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| || ||||| ||||| ||||||||||| | || ||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
8571896 |
ttccaggtggaatgggacatgttgttccaaacactccatcttcgtatgagttccttctctgctggactccattcctg |
8571972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 129 - 355
Target Start/End: Original strand, 28940695 - 28940921
Alignment:
| Q |
129 |
cttgtaccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaacca |
228 |
Q |
| |
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||||||||||||||||||||| | |||||||| |||||||||||||||||| || ||||| || ||||| || || || | ||| |||||||||| |
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| T |
28940695 |
cttgtaccaatcaccaataagaaatgtgtaatcattagctggttcagggaaaggaacaggaatccttggtctgctaaggattttgatggatccaaaacca |
28940794 |
T |
|
| Q |
229 |
ccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatgg |
328 |
Q |
| |
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|||||||| || ||||| || ||||||||||| ||| | ||||||||||||||||| || |||||||| | |||||||||||| |||| || ||||||| |
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| T |
28940795 |
ccagctgccttgtgaaaagcaagagatggaaaatagaagaagcttccaatttgatctttgacttgaagtgtgtatgtgaagttcttcccaggagggatgg |
28940894 |
T |
|
| Q |
329 |
ggcatgttgttcccgaaacaccatctt |
355 |
Q |
| |
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| |||||||| || |||| ||||||| |
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| T |
28940895 |
gacatgttgtaccataaactccatctt |
28940921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 312
Target Start/End: Complemental strand, 17346429 - 17346341
Alignment:
| Q |
224 |
aaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttc |
312 |
Q |
| |
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||||||| ||||| || |||||||| || || ||||||||| || |||| ||||| ||||| || |||||||||||||| ||||||||| |
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| T |
17346429 |
aaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctaccaatctgatcttttacttgaagaatataagtgaagttc |
17346341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 42015364 - 42015289
Alignment:
| Q |
220 |
ccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaa |
295 |
Q |
| |
|
||||| |||||||||||| ||||||| || || ||||||||| |||| |||||||| |||||||||||||||| |
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|
| T |
42015364 |
ccaaatccaccagctgctctttgaaaattaagtgaaggaaagtagaaaaaacttccaatctgatccttcacttgaa |
42015289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 42051830 - 42051870
Alignment:
| Q |
43 |
ttttttataaatgactcagttattacgggacggagcgagta |
83 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
42051830 |
ttttttacaaatggctcagttattacgggacggagggagta |
42051870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 33921641 - 33921681
Alignment:
| Q |
43 |
ttttttataaatgactcagttattacgggacggagcgagta |
83 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||| |
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|
| T |
33921641 |
ttttttaaaaatggctcagttattacgggacggagggagta |
33921681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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