View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_high_90 (Length: 204)
Name: NF16751_high_90
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_high_90 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 6e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 39027493 - 39027342
Alignment:
| Q |
53 |
atttttctaaaatttaacacataatttatatattgaatatccaatcaatcaatcaattattaaaagtatgattgtagtgacagaatagtcacccatccat |
152 |
Q |
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| T |
39027493 |
atttttctaaaatataatacataatttatatattgaatatccaatcaatcaatcaattattaaaagtatgattgtagtgacagaatagtcacccatccat |
39027394 |
T |
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| Q |
153 |
tttacatttacctttatcaaagcagaggcagagcatgtgtaatttgtcacca |
204 |
Q |
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| T |
39027393 |
tttacatttacctttatcaaagcagaggcagagcatgtgtaatttgtcacca |
39027342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 39029179 - 39029143
Alignment:
| Q |
67 |
taacacataatttatatattgaatatccaatcaatca |
103 |
Q |
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| T |
39029179 |
taacacataatttatatattgaatatccaatcaatca |
39029143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 26000584 - 26000550
Alignment:
| Q |
24 |
agttgtcataaaatgcttgtaaaaatatcattttt |
58 |
Q |
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| T |
26000584 |
agttgtcataaaatggttgtaaaaatatcattttt |
26000550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 30974013 - 30974057
Alignment:
| Q |
12 |
gagttgtcgaacagttgtcataaaatgcttgtaaaaatatcattt |
56 |
Q |
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| T |
30974013 |
gagttgtcaaaaagttgtcataaaatgattgtaaaaatatcattt |
30974057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 50652423 - 50652381
Alignment:
| Q |
24 |
agttgtcataaaatgcttgtaaaaatatcatttttctaaaatt |
66 |
Q |
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| T |
50652423 |
agttgtcataaaatggttgtacaaatatcatttctctaaaatt |
50652381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 22692119 - 22692079
Alignment:
| Q |
24 |
agttgtcataaaatgcttgtaaaaatatcatttttctaaaa |
64 |
Q |
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| T |
22692119 |
agttgtcataaaatggttgtacaaatatcatttctctaaaa |
22692079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 14426995 - 14426947
Alignment:
| Q |
12 |
gagttgtcgaacagttgtcataaaatgcttgtaaaaatatcatttttct |
60 |
Q |
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| T |
14426995 |
gagttgtccaacagttatcacaaaatgattgtacaaatatcatttttct |
14426947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 30530599 - 30530651
Alignment:
| Q |
13 |
agttgtcgaacagttgtcataaaatgcttgtaaaaatatcatttttctaaaat |
65 |
Q |
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| T |
30530599 |
agttgtctaaaagttgtcacaaaatggttgtataaatatcatttctctaaaat |
30530651 |
T |
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