View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_12 (Length: 583)
Name: NF16751_low_12
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 305 - 570
Target Start/End: Original strand, 4885073 - 4885338
Alignment:
| Q |
305 |
atattctctcgttttgttcttttcttttctttcttaccgacgagtttttgctatgacggtgattatttttatccggtggtggcggtgtagggagaggcat |
404 |
Q |
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| T |
4885073 |
atattctctcgttttgttcttttcttttctttcttaccgacgagtttttgctatgacggtgattatttttatccggtggtggcggcgtagggagaggcat |
4885172 |
T |
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| Q |
405 |
gaggaagtaaatcttaccgcgttgaagatcagcatcgggagggacaacaacgatcttaggaacaactccgccatcttgtgttgaaggtgaagaaggtttc |
504 |
Q |
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| T |
4885173 |
gaggaagtaaatcttaccgcgttgaagatcagcatcgggagggacaacaacgatcttaggaacaacaccgccatcttgtgttgaaggtgaagaaggtttc |
4885272 |
T |
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| Q |
505 |
ttgagaacatgttttgggtatgttttcatgatttcacttgctttgatgctgccactgatttcttct |
570 |
Q |
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| T |
4885273 |
ttgagaacatgttttgggtatgttttcatgatttcacttgctttgatgctgccactgatttcttct |
4885338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 4884861 - 4885013
Alignment:
| Q |
93 |
caaccgttatagatgatttgttggtgactcagaaatactctccaaatgaggtctccacacagcaacacgtcctcttcttctatctctctgactacaaacc |
192 |
Q |
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| T |
4884861 |
caaccgttatagatgatttgttggtgactcagaaatactctccaaatgaggtctccacacagcaacacgtcctcttcttctgtctctctgactacaaacc |
4884960 |
T |
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| Q |
193 |
ttctcagacagaatctcagtcaagtactgatcagaagacacaaccaacgtagc |
245 |
Q |
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| T |
4884961 |
ttctcagacagaatctcagtcaagtactgatcagaagaaacaaccaacgtagc |
4885013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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