View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_13 (Length: 564)
Name: NF16751_low_13
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 12 - 557
Target Start/End: Original strand, 49521478 - 49522023
Alignment:
| Q |
12 |
aataccgcctatgaaactgataactgttcgcttctgcgatgcttcaacatgatggccatcaacaactatagtcttttggtgatgagtgaacatagttgaa |
111 |
Q |
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| T |
49521478 |
aataccgcctatgaaactgataactgttcgcttctgcgatgcttcaacatgatggccatcaacaactatagtcttttggtgatgagtgaacatagttgaa |
49521577 |
T |
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| Q |
112 |
gtttcaaaaccttgaactatgctttttccaccatcagggttacgcggacataaaacacaatgtacctttgtgtttttaaaatactctgcagtttcttggt |
211 |
Q |
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| T |
49521578 |
gtttcaaaaccttgaactatgctttttccaccatcagggttacgcggacataaaacacaatgtacctttgtgttcttaaaatactctgcagtttcttggt |
49521677 |
T |
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| Q |
212 |
catgtgttcccatcaaaccgtctttcttaaaagccggaacagaggttctgtcatcccaaacaagcacaagaacattaacaccttcattggcttttttctt |
311 |
Q |
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| T |
49521678 |
catgtgttcccatcaaaccgtctttcttaaaagccggaacagaggttctgtcatcccaaacaagcacaagaacattaacaccttcgttggcttttttctt |
49521777 |
T |
|
| Q |
312 |
gagcatttctcctagggtgatactactttctgttgtcttgtttgggtccctaatcaaggttatttctgcatgaacagaccaaccagttatgtaaataaag |
411 |
Q |
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| T |
49521778 |
gagcatttctcctagggtgatactactttctgttgtcttgtttgggtccctaatcaaggttatttctgtatgaacagaccaaccagttatgtaaataaag |
49521877 |
T |
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| Q |
412 |
actttagcattcataatggcattgtaaatatcttcccaacatcttccaggtacataatattttgttccagatattggaatccacggatgaacactctcag |
511 |
Q |
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| T |
49521878 |
actttagcattcataatggcattgtaaatatcttcccaacatcttccaggtacataatattttgttccagatattggaatccacggatgaacactctcag |
49521977 |
T |
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| Q |
512 |
ggacgtgagcgtcttggtataaagtaacactacaaccttgtctctg |
557 |
Q |
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| T |
49521978 |
ggacgtgagcgtcttggtataaagtaacactacaaccttgtctctg |
49522023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 70 - 467
Target Start/End: Original strand, 49510592 - 49510989
Alignment:
| Q |
70 |
tcaacaactatagtcttttggtgatgagtgaacatagttgaagtttcaaaaccttgaactatgctttttccaccatcagggttacgcggacataaaacac |
169 |
Q |
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| T |
49510592 |
tcaacaattatagtcttctggtgatgagtgaacatagttaaaatttcaaaaccttgaactatacttcttccatcaccaggtttacgcgggcacaaaacac |
49510691 |
T |
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| Q |
170 |
aatgtacctttgtgtttttaaaatactctgcagtttcttggtcatgtgttcccatcaaaccgtctttcttaaaagccggaacagaggttctgtcatccca |
269 |
Q |
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| T |
49510692 |
aatggacatttgtgtttctaaaatactctgctgtttcttgatcatgagttgccatcaagccatctttcttaaagtcaggaacagaagttctgtcatccca |
49510791 |
T |
|
| Q |
270 |
aacaagcacaagaacattaacaccttcattggcttttttcttgagcatttctcctagggtgatactactttctgttgtcttgtttgggtccctaatcaag |
369 |
Q |
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| T |
49510792 |
aacaagcataagaacattaacaccttcattggctttcttcttaagaagctccccaagagtgatggttgctcttgttgactcgtttggatctctaatcaag |
49510891 |
T |
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| Q |
370 |
gttatttctgcatgaacagaccaaccagttatgtaaataaagactttagcattcataatggcattgtaaatatcttcccaacatcttccaggtacata |
467 |
Q |
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| T |
49510892 |
gttatttccgtgtaaacagaccaaccagttatgcaaataaaatgcttagcatcattaattgcattgcaagtatcttcccaacattttcccggcacata |
49510989 |
T |
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