View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_14 (Length: 552)
Name: NF16751_low_14
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 10 - 530
Target Start/End: Original strand, 1328296 - 1328816
Alignment:
| Q |
10 |
agcataggagcaaaaataaagtatgcctccaaactcattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagc |
109 |
Q |
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| T |
1328296 |
agcataggagcaaaaataaagtatgcctccaaactcattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagc |
1328395 |
T |
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| Q |
110 |
agcacctcacttgctgaccttgatgtagctattgtgaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaa |
209 |
Q |
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| T |
1328396 |
agcacctcacttgctgaccttgatgtagctattgtgaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaa |
1328495 |
T |
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| Q |
210 |
catgttactctcgcgcattcattagtgcttgtgttaataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttatttt |
309 |
Q |
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| T |
1328496 |
catgttactctcgcgcattcattagtgcttgtgttaataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttatttt |
1328595 |
T |
|
| Q |
310 |
gattcaaaggcttctagcagaaggtgaccctgcttatgagcaagagatattcttctcaactcgacgtgggactcgccttctcaacatgtccgattttcgt |
409 |
Q |
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| T |
1328596 |
gattcaaaggcttctagaagaaggtgaccctgcttatgagcaagagatattcttctcaactcgacgtgggactcgccttctcaacatgtccgattttcgt |
1328695 |
T |
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| Q |
410 |
gacagctcacaatctggttcgtgggacttctctgcatttgtgcgcacatattcgttatatttggatgagaggcttgagtacaagatgcaaagtcggcgtg |
509 |
Q |
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| T |
1328696 |
gacagctcacaatctggttcgtgggacttctctgcatttgtgcgcacatattcgttatatttggatgagaggcttgagtacaagatgcaaagtcggcgtg |
1328795 |
T |
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| Q |
510 |
gaaagcgtagcatgtttggtt |
530 |
Q |
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| T |
1328796 |
gaaagcgtagcatgtttggtt |
1328816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 45 - 406
Target Start/End: Original strand, 1923654 - 1924015
Alignment:
| Q |
45 |
cattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgctgaccttgatgtagctattgt |
144 |
Q |
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||||||||| |||| |||| ||||| || ||||| ||||||||||| |||||| || |||||||| ||||| | | ||| ||| | ||||| ||||| |
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| T |
1923654 |
cattaagaagagccattggagcagtgaaagatcaaacaagcataggcatagcaaaagttggaagcagtgcctcaataggtgatcttcaagtagccattgt |
1923753 |
T |
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| Q |
145 |
gaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgttactctcgcgcattcattagtgcttgtgtt |
244 |
Q |
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| T |
1923754 |
taaagcaacaaaacatgatgaaaatccagctgaagaaagacacattagagagattctaagcttaacatgttactcacgagcattcataagttcttgtgtg |
1923853 |
T |
|
| Q |
245 |
aataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaaggcttctagcagaaggtgaccctgctt |
344 |
Q |
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|| || ||||| | ||| | | |||||| | | ||||||||| ||||| ||||| ||| |||||||||||||| | | || || ||||| | ||||| |
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| T |
1923854 |
aacacactctctaaacgtttgatcaagacaagcagttggacagttgctttaaaaacacttgttttgattcaaaggttgttggctgatggtgatcgtgctt |
1923953 |
T |
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| Q |
345 |
atgagcaagagatattcttctcaactcgacgtgggactcgccttctcaacatgtccgatttt |
406 |
Q |
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|||| ||||| |||||||||||||||| |||||| ||||| ||||| |||||||| |||||| |
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| T |
1923954 |
atgaacaagaaatattcttctcaactcaacgtggaactcgacttcttaacatgtctgatttt |
1924015 |
T |
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