View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_15 (Length: 550)
Name: NF16751_low_15
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 47653836 - 47654285
Alignment:
| Q |
1 |
ttaattggtgagagagcgaaattgaatatctcaatgtttggacttgctacaaaagtcttcatgttagtgtagtcaggagacatgttattatgccggtaat |
100 |
Q |
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| T |
47653836 |
ttaattggcgagagagcgaaagtgaatatctcaatgtttggacttgctacaaaagtcttcatgttagtgtagtcagaagacatgttattatgccggtaat |
47653935 |
T |
|
| Q |
101 |
aatggtgatgcaagtattggatatagctccacacttgagggaagattgttgacttcaagtgtgagtgattagtctcgtatcaacatatgaatgaatttaa |
200 |
Q |
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| T |
47653936 |
aatggtgatgcaagtattggatataggtccacacttgagggaagattgttgacttcaagtgtgagtgattagtctcgtatcaacatatgaatgaatttaa |
47654035 |
T |
|
| Q |
201 |
tgtcggatatatacaagagaagactcatatacccaatgcattgagattttatatggagatgtgatttttgatctcgtaatcctagatcattggtttgttg |
300 |
Q |
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| T |
47654036 |
tgtcagatatatgcaagagaagactcatatactcaatgcattgagattttatatggagacatgatttttgatctcgtaatcctagatcgttggtttgttg |
47654135 |
T |
|
| Q |
301 |
ttattttcggcgctcttcataaatctccaacataattaaactgttagaacaacaaccaattatgaaaggaaaattaaacggcaaccgtaaacaatagata |
400 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47654136 |
ttattttcggcgctcttcataaatctccaacataaataaactgttagaacaacaaccaattatgaaagggaaattaaacggcaaccgtaaacaatagata |
47654235 |
T |
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| Q |
401 |
aacgaagtttggtaataaaattcggtcaattgtgcccgtataattgtgta |
450 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47654236 |
aacaaagtttggtaataaaattcggtcaattgtgcccgtataatcgtgta |
47654285 |
T |
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