View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_16 (Length: 514)
Name: NF16751_low_16
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 60 - 504
Target Start/End: Complemental strand, 4266870 - 4266426
Alignment:
| Q |
60 |
gaacaaaggagtggttcatgcatctataaatactcaagacgctcaagcaagttttagatagacgtgagtaagaggttttatagaatgaaatgtctacctt |
159 |
Q |
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| T |
4266870 |
gaacaaaggagtggttcatgcatctataaatactcaagacgctcaagcaagttttagatagacgtgagtaagaggttttatagaatgaaatatctacctt |
4266771 |
T |
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| Q |
160 |
tttcatggtacaaaggttcttttatagcaagagtttctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatca |
259 |
Q |
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| T |
4266770 |
tttcatggtacaaaggttcttttagagcaagagtttctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatca |
4266671 |
T |
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| Q |
260 |
ccctttattttcattacatagtgattattaaggagtaatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggtta |
359 |
Q |
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| T |
4266670 |
ccctttattttcattacatagtgattgttaaggagtaatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggtta |
4266571 |
T |
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| Q |
360 |
agttatgacaaaaactaacatattatcgtttattattaaaaagaaagaaagagcaatgcatgtttgtgcttgcggtgtagagcgtacattgcttgcacct |
459 |
Q |
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| T |
4266570 |
agttatgacaaaaactaacatattatcgtttattattaaaaagaaagaaagagcaatgcatgtttgtgcctgcggtgtagagcgtacattgcttgcacct |
4266471 |
T |
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| Q |
460 |
tcatattagtccaatctaccaataattttacatgagtataatcta |
504 |
Q |
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| T |
4266470 |
tcatattagtccaatctaccaataatcttacatgagtataatcta |
4266426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4267066 - 4266988
Alignment:
| Q |
1 |
gtcccttattgttgataaacttcataatgtggtttttactttggtgagtacgaatgggagaacaaaggagtggttcatgc |
80 |
Q |
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| T |
4267066 |
gtcccttattgttgataaacttcataatgtggtttttactttggtgagtac-tatgggagaacaaaggagtggttcatgc |
4266988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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