View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_17 (Length: 508)
Name: NF16751_low_17
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 25928924 - 25929397
Alignment:
| Q |
18 |
acatttgaattgtaaatgtgtttgttttcatgaagaggggttgagaaaggatgtactaacctttttcagctggttaagtttggtgatatcagtaaaagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25928924 |
acatttgaattgtaaatgtgtttgttttcatgaagaggggttgagaaaggatgtactaacctttttcagctggttaagtttggtgatatcagtaaaagaa |
25929023 |
T |
|
| Q |
118 |
ggaggcagattaccaaaggtctcagaaatctcagctcgaattcgttgttgccattccggataaactgcaaggagatacattgcccaaactactgaaagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25929024 |
ggaggcagattaccaaaggtctcagaaatctcagttcgaattcgttgttgccattccggataaactgcaaggagatacattgcccaaactactgaaagag |
25929123 |
T |
|
| Q |
218 |
cagtggattcagaaccagcaaagtagatacttttgcagatatctataatcagttgattcatgtcatgccctgctttcaaagtaccctttccactagcatt |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25929124 |
cagtggactcagaaccagcaaagtagatacttttgcagatatctataatcagttggttcatgtcatgccctgctttcaaagtaccctttccactagcatt |
25929223 |
T |
|
| Q |
318 |
caaaagtttctcatttgcaacaccttctattattttttgtaatagatcattatgtttcttattattattgttcttttggttttcgatttcgcgatcacgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25929224 |
caaaagtttctcatttgcaacaccttctattattttttgtaatagatcattatgtttcttattattattgttcttttggttttcgatttctcgatcacgg |
25929323 |
T |
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| Q |
418 |
atgatattcattatcaacacatccacctctttcttcaatttccagatctctctacggtccttattgggaagaaa |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25929324 |
atgatattcattatcaacacatccacctctttcttcaatttccagatctctctacggtccttattgggaagaaa |
25929397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 332 - 455
Target Start/End: Complemental strand, 26134004 - 26133881
Alignment:
| Q |
332 |
ttgcaacaccttctattattttttgtaatagatcattatgtttcttattattattgttcttttggttttcgatttcgcgatcacggatgatattcattat |
431 |
Q |
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||||||||||||||| ||||||||||||||||||| | ||||||| ||| ||| |||||| ||||||| |||| |||||| |||||||||||||||| |
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| T |
26134004 |
ttgcaacaccttctagtattttttgtaatagatcactttgtttctcatttgtatcgttcttctggttttgcattttacgatcatggatgatattcattat |
26133905 |
T |
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| Q |
432 |
caacacatccacctctttcttcaa |
455 |
Q |
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||||| ||||||||||||||||| |
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| T |
26133904 |
caacatgtccacctctttcttcaa |
26133881 |
T |
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