View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_18 (Length: 506)
Name: NF16751_low_18
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Original strand, 5626793 - 5627274
Alignment:
| Q |
10 |
gcataggataaattatatgttaaatgaaaactaagaaaaaatgggagaagataaagttgaatttgtaattttacctgcaagattaaaccaatgttaacaa |
109 |
Q |
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| T |
5626793 |
gcataggataaattatatgttaaatgaaaactaagaaaaaatgggagaaaataaagttgaatttgtaattttacctgcaagattaaaccaatgttaacaa |
5626892 |
T |
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| Q |
110 |
caagagcattgggaataggttcaactggaatccattcatcatccttaagaatttgaagtccatgcacctcttgatcttgaagtagaatagtgatgattgt |
209 |
Q |
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| T |
5626893 |
caagagcattgggaataggttcaactggaatccattcatcatccttaagaatttgaagtccatgcacctcttgatcttgaagtagaatagtgatgattgt |
5626992 |
T |
|
| Q |
210 |
agggtctctatgtttggctaggcccaaagttaaacttggttcagggcaaggaggaaagtgatgacctagtattactggattttcactaagttcaccaatg |
309 |
Q |
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| T |
5626993 |
agggtctctatgtttggctaggcccaaagttaaacttggttcaggacaaggaggaaagtgatgacctagtattactggattttcactaagttcaccaatg |
5627092 |
T |
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| Q |
310 |
aaatattctggtttaagccctaacccttcacaaagcatctccaaaatttcatgtcccaatttgttgagttcttgtgtatatttaccaacaacctcactga |
409 |
Q |
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| T |
5627093 |
aaatattctagtttaagccctaacccttcacaaagcatctccaaaatttcatgtcccaatttgttgagttcttgtgtatatttaccaacaacctcactga |
5627192 |
T |
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| Q |
410 |
agaagaaaagagagttaaatttgtttacttgaggtgaaatttggtatggataaaatagaaatg-aaaatactagaaacgtga |
490 |
Q |
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| T |
5627193 |
agaagaaaagagagttaaatttgtttacttgaggtgaaatttggtatggataaaatagaaatgaaaaatactagaaacgtga |
5627274 |
T |
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