View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_19 (Length: 493)
Name: NF16751_low_19
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 10194107 - 10194575
Alignment:
| Q |
17 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaactgcatcgcatcaattgcattcactgcaacatggaacttatc |
116 |
Q |
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| T |
10194107 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaactgaatc-----aattgcattcactgcaacatggaacttatc |
10194201 |
T |
|
| Q |
117 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgccgcctaacagtgtttgatc |
216 |
Q |
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| T |
10194202 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgcagcctaacagtgtttgatc |
10194301 |
T |
|
| Q |
217 |
ataaatcgcaaattataattgacaagaa---------aaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
307 |
Q |
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| T |
10194302 |
ataaatcgcaaattataattgacaagaaaaaccagaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
10194401 |
T |
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| Q |
308 |
tctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtt |
407 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10194402 |
tctttaaatgcgttacttattcaaaatagaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtt |
10194501 |
T |
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| Q |
408 |
taaatccactaaagctaatcagcaaaatcacaggttcagaactaaactgtagataaccgaaaccaccctttact |
481 |
Q |
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| T |
10194502 |
taaatccactaaagctaatcagcaaaatcacaggttcagaactaaactgtagataactgaaaccaccctttact |
10194575 |
T |
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Back To:
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Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 309 - 480
Target Start/End: Complemental strand, 19459304 - 19459133
Alignment:
| Q |
309 |
ctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgttt |
408 |
Q |
| |
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|||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
19459304 |
ctttgaatgcgttacttgttcaaaatcaaactctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaatacggttt |
19459205 |
T |
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| Q |
409 |
aaatccactaaagctaatcagcaaaatcacaggttcagaactaaactgtagataaccgaaaccaccctttac |
480 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19459204 |
aaatccactgaagctaatcagcaaaatcacaggttcagaactaaactgtagataactgaaaccaccctttac |
19459133 |
T |
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