View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_20 (Length: 489)
Name: NF16751_low_20
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Complemental strand, 2289638 - 2289159
Alignment:
| Q |
8 |
aagcaaaggtgctgagaaagtgagt---aatgttgaagatattattcatggtaagaatgaaatttcagcaagtgatgaatagcaaacaattcaaggtgat |
104 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2289638 |
aagcgaaggtgctgagaaagtgagtctcaatgttgaagatattattaatggtaagaatgaaatttcagcaagtgatgaatagcaaacagttcaaggtgat |
2289539 |
T |
|
| Q |
105 |
gaacaggtgaagaaaatggttgataatgaaagtgttatttggagctttgctcaatgaagtagcttagtatcactagttaatacttggtgcttcnnnnnnn |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2289538 |
gaacaggtgaagaaaatggttgataatgaaagtgttatttggagctttgctcaatgaagtagcttagtatcactagttaatacttagtgcttcttttttt |
2289439 |
T |
|
| Q |
205 |
nn-----gcaaagcttggtagttaggttcttatatgcactttatcaatacttagtgcccttaacttttttgtggtgctgctattgaagttgttttagcta |
299 |
Q |
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||||||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289438 |
ttttgttgcaaagcttggtagtaagctttttatatgcactttatcaatactttgtgcccttaacttttttgtggtgctgctattgaagttgttttagcta |
2289339 |
T |
|
| Q |
300 |
ttctgtgacattctggatggttttagtcttgttttctgttttaacatttgggttttacttaggagattaaacttgtatgcctc------ctagatcagat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
2289338 |
ttctgtgacattctggatggttttagtcttgttttctgttttaacatttgggttttacttaggagattaaacttgtatgcctcctagtcctagagcagat |
2289239 |
T |
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| Q |
394 |
cttttggtttttcatagtgcatatctcaatgtagattgtagacttctgtcacatttttcatgtgaactatatgaggaact |
473 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289238 |
cttttggtttttcatagtgcatatctcaatgcagattgtagacttctgtcacatttttcatgtgaactatatgaggaact |
2289159 |
T |
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