View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_23 (Length: 472)
Name: NF16751_low_23
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 77 - 457
Target Start/End: Original strand, 39178773 - 39179153
Alignment:
| Q |
77 |
tacaaggaacctcccatgtacaaatcttccaaggttgtattacatttaacaatcacgtcatcaactttcagaattgtctcttcctcctccattggacctc |
176 |
Q |
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| T |
39178773 |
tacaaggaacctcccatgtacaaatcttccaaggttgtattacatttaacaatcacgtcatcaactttcagaattgtctcttcctcctccattggacctc |
39178872 |
T |
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| Q |
177 |
caccaaaaacctaaaggaaacaatattagtttcataataaaacaaagaagcataaccatcgaaaaagtgcaaattcaatacaaaagctattttaaagagg |
276 |
Q |
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| T |
39178873 |
caccaaaaacctaaaggaaacaatattagtttcataataaaacaaagaagcataaccatcgaaaaagtgcaaattcaatacaaaagctattttaaagagg |
39178972 |
T |
|
| Q |
277 |
ataatgtggtttacagatcatcaagaatttctcaggttcatatatatagttcgctataaacatgatttacaataagacattaaggtgtagtttggtcaat |
376 |
Q |
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| T |
39178973 |
ataatgtggtttacagatcatcaagaatttctcaggttcatatatatagttcgctataaacatgatttacaataagacattaaggtgtagtttggtcaat |
39179072 |
T |
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| Q |
377 |
gtagtgaagctgatttctttgcttcctaatacttttggtgttgttgattgatcatgaaaatgttaaccgagtgcacatatg |
457 |
Q |
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| T |
39179073 |
gtagtgaagctgatttctttgcttcctaatacttttggtattgttgattgatcatgaaaatgttaaccgagtgcacatatg |
39179153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 39178094 - 39178158
Alignment:
| Q |
17 |
atactcgtctcaaaaccaataaggtcttgaatctgaaaataaaggttaaaatataaactttacaa |
81 |
Q |
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| T |
39178094 |
atactcgtctcaaagccaataaggtcttgaatctgaaaataaaggttaaaatataaactttacaa |
39178158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 39173763 - 39173840
Alignment:
| Q |
372 |
tcaatgtagtgaagctgatttctttgcttcctaatacttttggtgttgttgattgatcatgaaaatgttaaccgagtg |
449 |
Q |
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| T |
39173763 |
tcaatatagtgaagctgatatcttttcttcctaatacttttgttattgttgatcgatcatgaaaatgttaacctagtg |
39173840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 39169819 - 39169896
Alignment:
| Q |
372 |
tcaatgtagtgaagctgatttctttgcttcctaatacttttggtgttgttgattgatcatgaaaatgttaaccgagtg |
449 |
Q |
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| T |
39169819 |
tcaatatagtgaagctgatatctttgtctcccaatacttttgttattgttgattgatcatgaaaatgttaacctagtg |
39169896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 39169722 - 39169789
Alignment:
| Q |
187 |
ctaaaggaaacaatattagtttcataataaaacaaagaagcataaccatcgaaaaagtgcaaattcaa |
254 |
Q |
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| T |
39169722 |
ctaaaggaaacatcatcagttttatcataaaacaaagaagtataaccatcgaaaacgtacaaattcaa |
39169789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 39169676 - 39169711
Alignment:
| Q |
77 |
tacaaggaacctcccatgtacaaatcttccaaggtt |
112 |
Q |
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| T |
39169676 |
tacaaggaacctcccgtgtacaaatcttccaaggtt |
39169711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 39173666 - 39173733
Alignment:
| Q |
187 |
ctaaaggaaacaatattagtttcataataaaacaaagaagcataaccatcgaaaaagtgcaaattcaa |
254 |
Q |
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| T |
39173666 |
ctaaaggaaacatcatcagttttatcataaaacaaagaagtataaccatcgaaaacttacaaattcaa |
39173733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 39168316 - 39168360
Alignment:
| Q |
37 |
aaggtcttgaatctgaaaataaaggttaaaatataaactttacaa |
81 |
Q |
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| T |
39168316 |
aagggcttgaagctgaaaataaaggttaaaaaacaaactttacaa |
39168360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 39173619 - 39173655
Alignment:
| Q |
76 |
ttacaaggaacctcccatgtacaaatcttccaaggtt |
112 |
Q |
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||||||||||| |||| |||||||||||||||||||| |
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| T |
39173619 |
ttacaaggaacttcccgtgtacaaatcttccaaggtt |
39173655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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