View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_low_24 (Length: 466)

Name: NF16751_low_24
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_low_24
NF16751_low_24
[»] chr5 (5 HSPs)
chr5 (1-126)||(8362280-8362405)
chr5 (137-240)||(8370159-8370262)
chr5 (137-235)||(8371559-8371657)
chr5 (431-466)||(8362515-8362550)
chr5 (364-397)||(8362460-8362493)
[»] chr7 (1 HSPs)
chr7 (135-201)||(44827783-44827849)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 8362280 - 8362405
Alignment:
Q  1 tagctagcaacttccttgcaagtcatgaacttcaaaactaagttccggtatataaggaaactgcagagcatgaattgcatataacaatacatataatata 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  8362280 tagctagcaacttccttgcaaatcatgaacttcaaaactaagttcctgtatataaggaaactacaaagcatgaattgcatataacaatacatataatata 8362379  T
Q  101 gttttaaagtgtaaggtgaaaaatag 126  Q
    ||||||||||||||||||||||||||    
T  8362380 gttttaaagtgtaaggtgaaaaatag 8362405  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 8370159 - 8370262
Alignment:
Q  137 atacttatttttcccaaacatttctattcccttcaaacataattctttttgcaaaagtttccaattagatacactacacctcccttcaacttgtccttcc 236  Q
    |||| ||||| |||||||||||||||||||||||| |||||| ||||| | ||||||||||||| | || |||| | |  |||| ||||| |||||||||    
T  8370159 atacctatttctcccaaacatttctattcccttcagacataaatctttctccaaaagtttccaagttgaaacacaagagttcccctcaacatgtccttcc 8370258  T
Q  237 attg 240  Q
    ||||    
T  8370259 attg 8370262  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 8371559 - 8371657
Alignment:
Q  137 atacttatttttcccaaacatttctattcccttcaaacataattctttttgcaaaagtttccaattagatacactacacctcccttcaacttgtccttc 235  Q
    |||| ||||| |||||||||||||||||||||||| ||||| |||||| | ||||||||||||||| || |||| | |  |||| ||||| ||||||||    
T  8371559 atacctatttctcccaaacatttctattcccttcatacatagttctttctccaaaagtttccaatttgaaacacaagagttcccctcaacatgtccttc 8371657  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 466
Target Start/End: Original strand, 8362515 - 8362550
Alignment:
Q  431 aaacatgtgttaagaaatgaatgtagaacattgttg 466  Q
    ||||||||||||||||||||||||||||||||||||    
T  8362515 aaacatgtgttaagaaatgaatgtagaacattgttg 8362550  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 8362460 - 8362493
Alignment:
Q  364 caaattggttgctttactttctcaaaagtaaacc 397  Q
    ||||||||||||||||||||||||||||||||||    
T  8362460 caaattggttgctttactttctcaaaagtaaacc 8362493  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 44827783 - 44827849
Alignment:
Q  135 ttatacttatttttcccaaacatttctattcccttcaaacataattctttttgcaaaagtttccaat 201  Q
    |||||| ||||| |||||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  44827783 ttatacctatttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaat 44827849  T

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