View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_29 (Length: 415)
Name: NF16751_low_29
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 32549524 - 32549141
Alignment:
| Q |
1 |
atgaacatctaaattattaagtattaaaaatcacannnnnnn--gttataattcgtaacaacaagaatagttcgtaaaatatctacataaattcgtaaat |
98 |
Q |
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| T |
32549524 |
atgaacatctaaattattaagtattaaaaatcacatttttttttgttataattcgtaacaacaagaatagttcgtaaaatatctacataaattcgtaaat |
32549425 |
T |
|
| Q |
99 |
tgtgtgatgttgtatgacatattaattgaatacaaactatgaagcgccgaaacttctgatcaaaggtgtgtctggtgtacgacggaaaatcacaccttca |
198 |
Q |
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| T |
32549424 |
tgtgtgatgttgtttgacatattaattgaatacaaactatgaagcgccgaaacttctgatcaaaggtgtg-------------------tcacaccttca |
32549344 |
T |
|
| Q |
199 |
ttacatcattcaacatattttgcacagnnnnnnnntcagggctttgtgatcgatcacatacattagggtactgaagtgnnnnnnnnnnnnnnnnnnnnnn |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32549343 |
ttacatcattcaacatattttgcacacaaaaaaaatcagggctttgtgatcgatcacatacattagggtactgaagtgaaaaataaataaaaaatcaaaa |
32549244 |
T |
|
| Q |
299 |
nttatacctggaagtggatgagtttggacttgtggatgagtttggactgggggttgacggttgttggggttgggcttggtgatcggagcaggagttgaag |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32549243 |
tttatacctggaagtggatgagtttggacttgtggatgagtttggactgggggttgacggttgttggggttgggcttggtgatcggagcaggagttgaag |
32549144 |
T |
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