View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_low_3 (Length: 853)

Name: NF16751_low_3
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_low_3
NF16751_low_3
[»] chr1 (1 HSPs)
chr1 (19-853)||(14869141-14869975)
[»] chr8 (1 HSPs)
chr8 (19-852)||(16908684-16909526)
[»] chr7 (8 HSPs)
chr7 (137-276)||(14710257-14710396)
chr7 (130-198)||(26260382-26260450)
chr7 (24-98)||(14710144-14710218)
chr7 (26-94)||(26278313-26278381)
chr7 (130-192)||(26227488-26227550)
chr7 (135-188)||(26204405-26204458)
chr7 (135-188)||(26224043-26224096)
chr7 (130-198)||(26207921-26207989)
[»] chr5 (6 HSPs)
chr5 (137-256)||(17572660-17572779)
chr5 (137-256)||(17619933-17620052)
chr5 (24-98)||(17620097-17620171)
chr5 (123-251)||(5995038-5995166)
chr5 (42-98)||(17572565-17572621)
chr5 (36-97)||(5994948-5995009)
[»] chr6 (3 HSPs)
chr6 (167-273)||(12613434-12613540)
chr6 (24-98)||(12613609-12613683)
chr6 (321-409)||(12613301-12613389)


Alignment Details
Target: chr1 (Bit Score: 794; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 19 - 853
Target Start/End: Complemental strand, 14869975 - 14869141
Alignment:
Q  19 gctctagtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactccgtnnnnnnntcaccatcttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  14869975 gctctagtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactccgtaaaaaaatcaccatcttc 14869876  T
Q  119 aacatcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869875 aacatcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatg 14869776  T
Q  219 ctcccaaaactgacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctctacccg 318  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869775 ctcccaaaactaacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctctacccg 14869676  T
Q  319 ctttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgtactctc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869675 ctttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgtactctc 14869576  T
Q  419 aatctcatgactatcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctctaagccaatcc 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869575 aatctcatgactatcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctctaagccaatcc 14869476  T
Q  519 ggaagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagtgttcaa 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869475 ggaagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagtgttcaa 14869376  T
Q  619 tagagttcattgcagaatgagcaaagtaacttccactaatgcaaattaaccttggaattcccaattcatcagcaatatcaacactccaaggatagaacat 718  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14869375 tagagttcattgcagaatgagcaaagtaacttccactaatacaaattaaccttggaattcccaattcatcagcaacatcaacactccaaggatagaacat 14869276  T
Q  719 gtcagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgtatctcatta 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869275 gtcagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgtatctcatta 14869176  T
Q  819 ggagtgtcggcgttgaagcttcccattccttgtgc 853  Q
    ||||||||||||||||||||| |||||||| ||||    
T  14869175 ggagtgtcggcgttgaagctttccattcctcgtgc 14869141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 852
Target Start/End: Original strand, 16908684 - 16909526
Alignment:
Q  19 gctctagtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactccgtnnnnnnn------tcacc 112  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  |             |||||    
T  16908684 gctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttctttctttcattctcttctcaaactcactcaaaaaaccatcatcacc 16908783  T
Q  113 atcttcaacatcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttg 212  Q
     |||||  ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  16908784 gtcttcggcatcttcgattttcctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttg 16908883  T
Q  213 ttcatgctcccaaaactgacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctc 312  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  16908884 ttcatgctcccaaaactaacataaagaacagaatcatatttctttgaatcaagccacttaagcaccccttcttcttcatcttcttctttaccatgtcctc 16908983  T
Q  313 tacccgctttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgt 412  Q
    |||| |||||||| |||||||||| ||||| ||| | ||||||||||||||  |||||||||||  ||||||| ||| |||||||||  |||||||| ||    
T  16908984 taccagctttatctgaatcatctttgttcatccacaaagaaactggtcccacactccaactcttacttcccatggctatcttgtaatagtcctcataagt 16909083  T
Q  413 actctcaatctcatga---ctatcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctcta 509  Q
    ||  |||||||||| |   |||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||| |||| |||||||||    
T  16909084 accttcaatctcataatagctatcaaacaatgatccatagctttttttctctgaatctttgatcatcttcatcaaataagtataaccatttggtgctcta 16909183  T
Q  510 agccaatccggaagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgaga 609  Q
    ||||||||||||||||| |||||  |||||||||| |||||||||||||||||||| ||||||||  |||||||| |||||||||| || ||||||   |    
T  16909184 agccaatccggaagttgcaaacgcgtcatttccacgttgtgaggcaacccaggaagcagaaaacttacgctattcgatttaactttggcatgaggttcaa 16909283  T
Q  610 agtgttcaatagagttcattgcagaatgagcaaagtaacttccactaatgcaaattaaccttggaattcccaattcatcagcaatatcaacactccaagg 709  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  16909284 attgttcaatagagttcattgcagaatgagcaaagtaacttccaccaatacaaatcaaccttggaattcccaattcatcagcaacatcaacactccaagg 16909383  T
Q  710 atagaacatgtcagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgt 809  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||   ||||||||||||||||| |||  |    
T  16909384 ataaaacatgtcagtgactatgaaatcaggtttcatgtcacgaaatagttgtgtgaattgctcttggagaatggcaagtccctgatagattttggaaatt 16909483  T
Q  810 atctcattaggagtgtcggcgttgaagcttcccattccttgtg 852  Q
    || || ||||||||||| || ||||| ||| ||||||||||||    
T  16909484 atgtctttaggagtgtcagcattgaaactttccattccttgtg 16909526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 137 - 276
Target Start/End: Original strand, 14710257 - 14710396
Alignment:
Q  137 aacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactgacatag 236  Q
    |||||||||||||||||||||||  |||  |||||||||||||||||||||||  || ||||  || ||||||||||| | ||| |||||||| | ||||    
T  14710257 aacaacccaaatgaaatcatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttagatag 14710356  T
Q  237 agaacagaatcatctttcttagaatcaagccacttaagca 276  Q
    ||||||||||  ||||||||||| | |||||| |||||||    
T  14710357 agaacagaattctctttcttagagttaagccatttaagca 14710396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 26260450 - 26260382
Alignment:
Q  130 ttttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgag 198  Q
    |||||||||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||| |||||    
T  26260450 ttttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaacctgag 26260382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 14710144 - 14710218
Alignment:
Q  24 agtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc 98  Q
    ||||||| || ||||||||||||||||||||||||||| || || |||||||| |||| |||||| |||||||||    
T  14710144 agtatcaacatttgtggtgcccaaccccatatcaaataacccttattgctttctttcactctcttttcaaactcc 14710218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 26278381 - 26278313
Alignment:
Q  26 tatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaa 94  Q
    |||||||||||||||||||||| ||||||| |  ||||| ||||||||||| ||||| || ||||||||    
T  26278381 tatcagcagttgtggtgcccaatcccatatgatgtagcccttgttgctttctttcatccttttctcaaa 26278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 26227550 - 26227488
Alignment:
Q  130 ttttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaa 192  Q
    |||||||||||||||||||||||| ||| || |||| ||||||  ||||||||||||| ||||    
T  26227550 ttttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaa 26227488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 26204458 - 26204405
Alignment:
Q  135 ctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttca 188  Q
    ||||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||    
T  26204458 ctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca 26204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 26224096 - 26224043
Alignment:
Q  135 ctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttca 188  Q
    ||||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||    
T  26224096 ctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca 26224043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 26207989 - 26207921
Alignment:
Q  130 ttttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgag 198  Q
    |||||||||||||||||||||||| ||| || |||| ||| ||  ||||||||||||| |||| |||||    
T  26207989 ttttcctaacaacccaaatgaaattatgaccggaattttccagaccatgagctatttctacaatctgag 26207921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 17572660 - 17572779
Alignment:
Q  137 aacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactgacatag 236  Q
    |||||||||||||||||||||||  |||  |||||||||||||||||||||||  || ||||  || ||||||||||| | ||| |||||||| ||||||    
T  17572660 aacaacccaaatgaaatcatggcttgaagtttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttacatag 17572759  T
Q  237 agaacagaatcatctttctt 256  Q
    ||||||||||  ||||||||    
T  17572760 agaacagaattctctttctt 17572779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 17620052 - 17619933
Alignment:
Q  137 aacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactgacatag 236  Q
    ||||||||||||||||| |||||  |||  |||||||||||||||||||||||  || ||||  |  ||||||||||| | ||| |||||||| ||||||    
T  17620052 aacaacccaaatgaaattatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatggtgggaacttgtttaagctgccaaaacttacatag 17619953  T
Q  237 agaacagaatcatctttctt 256  Q
    | ||||||||  ||||||||    
T  17619952 ataacagaattctctttctt 17619933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 17620171 - 17620097
Alignment:
Q  24 agtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc 98  Q
    ||||||| || |||||| |||||||||||||||||||| || |||||| |||| |||||||| ||||||||||||    
T  17620171 agtatcaacatttgtggggcccaaccccatatcaaataacccttgttgttttctttcattcttttctcaaactcc 17620097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 5995038 - 5995166
Alignment:
Q  123 tcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcc 222  Q
    |||||| |||| ||||||||||||||||||| ||| || |||| |||||||||||| || |||||||| | ||||| |  ||| || || ||||| || |    
T  5995038 tcttcattttttctaacaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttcaactaactgagaataaggaaatttattcatactgc 5995137  T
Q  223 caaaactgacatagagaacagaatcatct 251  Q
    ||||||| ||||| | ||||||| |||||    
T  5995138 caaaacttacatataaaacagaaccatct 5995166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 17572565 - 17572621
Alignment:
Q  42 gcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc 98  Q
    |||||||||||||||||||| || || |||||||| |||| |||||| |||||||||    
T  17572565 gcccaaccccatatcaaataacccttattgctttctttcactctcttttcaaactcc 17572621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 5994948 - 5995009
Alignment:
Q  36 tgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactc 97  Q
    ||||||||||| ||||| ||||||||||||||    ||||| |||||| |||||||||||||    
T  5994948 tgtggtgcccatccccaaatcaaatagccttttccactttctttcattttcttctcaaactc 5995009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 12613540 - 12613434
Alignment:
Q  167 ttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactgacatagagaacagaatcatctttcttagaatcaagc 266  Q
    |||||||||||||||||||||||  || ||||  |  ||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||| ||||    
T  12613540 ttcaagtgcatgagctatttcaatgagttgagatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaagc 12613441  T
Q  267 cacttaa 273  Q
    || ||||    
T  12613440 catttaa 12613434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 12613683 - 12613609
Alignment:
Q  24 agtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc 98  Q
    ||||||| || ||||||||||||||||||||||||||| || || |||||||| |||| ||| ||||||||||||    
T  12613683 agtatcaacaattgtggtgcccaaccccatatcaaataacccttattgctttctttcactcttttctcaaactcc 12613609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 12613389 - 12613301
Alignment:
Q  321 ttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcata 409  Q
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T  12613389 ttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacactttgttccaaatgcattcttgtaatgctcctcata 12613301  T

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