View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_32 (Length: 407)
Name: NF16751_low_32
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 185 - 383
Target Start/End: Complemental strand, 39100963 - 39100766
Alignment:
| Q |
185 |
cagttttcttggatgcaagagttttgccagtttggtccttgtttgcatcatataagcacagatga-tctagcagcttcaatattttgtttctttgtgata |
283 |
Q |
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| T |
39100963 |
cagttttcttggatgcaagagatt-gccggtttggttcttgttggcattatataagcacggatgaatctagcagcttcgatattttgtttcttcatgata |
39100865 |
T |
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| Q |
284 |
agtttctggacaaaatctgcatggtacactaaagtttcaattcaacaaaactaaactagttatgccatcaagtcagttctaattaaccaaaactaagcag |
383 |
Q |
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| T |
39100864 |
agtttctcgacaaaatctgcaaggtacgctaaaatttcaattcaacaaaact-aactagttatgccattatgtcagttctaattaaccaaaactaagcag |
39100766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 222 - 383
Target Start/End: Complemental strand, 39605197 - 39605036
Alignment:
| Q |
222 |
cttgtttgcatcatataagcacagatga-tctagcagcttcaatattttgtttctttgtgataagtttctggacaaaatctgcatggtacactaaagttt |
320 |
Q |
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| T |
39605197 |
cttgttggcattatataagcacgaatgaatctagcagcttcaatattttgtttcttcatgataagtttctgaacaaaatctgcaaggtgcaccaaaattt |
39605098 |
T |
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| Q |
321 |
caattcaacaaaactaaactagttatgccatcaagtcagttctaattaaccaaaactaagcag |
383 |
Q |
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| T |
39605097 |
cacttcaacaaaact-aactagttatgccatcaagtcagtcccaattaaccaaaactaagcag |
39605036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 39605392 - 39605272
Alignment:
| Q |
59 |
agattgttgttaattcatttgcacattgaacatatggaggatggtcctgctttcacaatcaacatgttgatttataactaacaaacaggtgcgtgaagat |
158 |
Q |
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| T |
39605392 |
agattcttgctaattcatttgcacattgaacattaggaggatggtcctgatttcacagtccacgtattaatttacaaccaacatgcaggtgcatgaagat |
39605293 |
T |
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| Q |
159 |
ggaataattcataaaatagaa |
179 |
Q |
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|| ||| |||||||||||||| |
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| T |
39605292 |
gggatatttcataaaatagaa |
39605272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 39502897 - 39503016
Alignment:
| Q |
66 |
tgttaattcatttgcacattgaacatatggaggatggtcctgctttcacaatcaacatgttgatttataactaacaaacaggtgcgtgaagatggaat-a |
164 |
Q |
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| T |
39502897 |
tgttacttcatttgcacgttgagcatctggaggatggtcctgatttcacatttaacacattaatttataaccaacatgcaggtgcatgaacatggaataa |
39502996 |
T |
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| Q |
165 |
attcataaaatagaattagc |
184 |
Q |
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||| |||||||||||||||| |
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| T |
39502997 |
atttataaaatagaattagc |
39503016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 380
Target Start/End: Original strand, 39503116 - 39503249
Alignment:
| Q |
249 |
atctagcagcttcaatattttgtttctttgtgataagtttctggacaaaatctgcatggtacactaaagtttcaattcaacaaaactaa--actagttat |
346 |
Q |
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|||||||||||||| | ||||||| || ||||||||||||| |||||||||||| |||||| ||| ||||| |||| |||| |||| | | |||| |
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| T |
39503116 |
atctagcagcttcagtcttttgttcctgcatgataagtttctgaacaaaatctgcaaggtacaacaaaatttcacttcatcaaacctaatgagttattat |
39503215 |
T |
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| Q |
347 |
gccatcaagtcagttctaattaaccaaaactaag |
380 |
Q |
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| T |
39503216 |
gccatcaagtcggttcaaattaactaaaactaag |
39503249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 39101156 - 39101095
Alignment:
| Q |
21 |
acaataacagacaaattgcataatagatcaatagagatagattgttgttaattcatttgcacatt |
85 |
Q |
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||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||||| |
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| T |
39101156 |
acaataacagacaaattgcataa---atcagtagagataggttcctgttaattcatttgcacatt |
39101095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 33153198 - 33153104
Alignment:
| Q |
235 |
tataagcacagatga-tctagcagcttcaatattttgtttctttgtgataagtttctggacaaaatctgcatggtacactaaagtttcaattcaa |
328 |
Q |
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|||||||||| |||| |||| |||||||||||| ||| ||||| |||||| ||||| |||||||||||| | | || |||||||||| ||||| |
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| T |
33153198 |
tataagcacatatgaatctaacagcttcaatatgttgcttcttccggataagattctgaacaaaatctgcaagttgcaataaagtttcacttcaa |
33153104 |
T |
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