View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_35 (Length: 402)
Name: NF16751_low_35
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 4191322 - 4191695
Alignment:
| Q |
19 |
aagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggatattgaggctgcattcagcgtatgcacag |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
4191322 |
aagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggataatgaggctgcattcagcggatgcacag |
4191421 |
T |
|
| Q |
119 |
taaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191422 |
taaattttcatgataaagaatacggaactcttttagacgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattca |
4191521 |
T |
|
| Q |
219 |
tatatataggtttctagaggatggaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagatta |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191522 |
tatatataggtttctagaggatggaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagatta |
4191621 |
T |
|
| Q |
319 |
cttgcaggaataggacctgttctcaggttttatgatttgggaaaaagacggttattaaggaagtatgagaataa |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191622 |
cttgcaggaataggacctgttctcaggttttatgatttgggaaaaagacggttattaaggaagtatgagaataa |
4191695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 52210881 - 52211254
Alignment:
| Q |
19 |
aagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggatattgaggctgcattcagcgtatgcacag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52210881 |
aagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggataatgaggctgcattcagcgtatgcacag |
52210980 |
T |
|
| Q |
119 |
taaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52210981 |
taaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattca |
52211080 |
T |
|
| Q |
219 |
tatatataggtttctagaggatggaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagatta |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52211081 |
tatatataggtttctagaggatggaagttctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagatta |
52211180 |
T |
|
| Q |
319 |
cttgcaggaataggacctgttctcaggttttatgatttgggaaaaagacggttattaaggaagtatgagaataa |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
52211181 |
cttgcaggaataggacctgttctcaggttttatgatttgggaaaaagacggttattaaggaagtgtgagaataa |
52211254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 47857656 - 47858029
Alignment:
| Q |
19 |
aagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggatattgaggctgcattcagcgtatgcacag |
118 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| ||||||||||| || |||||| ||||||||||||| | |||||||||||||||| ||||||| | |
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|
| T |
47857656 |
aagtgggtatcctgcatcagagttcttgatccaaggacaggaaatacgacatgtcttctggagcttcaggagaatgaggctgcattcagcatatgcaccg |
47857755 |
T |
|
| Q |
119 |
taaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattca |
218 |
Q |
| |
|
||||||||||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||| |||| |||||||||||||| |||||||||||| |
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|
| T |
47857756 |
taaattttcatgacaaggagtacggaacccttttagctgttggcacagcaaaggggctgcagtttacacccaaaaggagtttaactgttggatttattca |
47857855 |
T |
|
| Q |
219 |
tatatataggtttctagaggatggaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagatta |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |
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| T |
47857856 |
tatatataggtttctagatgatggaaggtctcttgaacttcttcacaaaactcaggttgagggtgttcctcttgctctatgtcagtttcaaggaagatta |
47857955 |
T |
|
| Q |
319 |
cttgcaggaataggacctgttctcaggttttatgatttgggaaaaagacggttattaaggaagtatgagaataa |
392 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||| || | ||||||||| |
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| T |
47857956 |
cttgcaggaataggacctgtgctcaggctatatgatttgggaaaaagacgattattaagaaaatgtgagaataa |
47858029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 47716427 - 47716054
Alignment:
| Q |
19 |
aagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggatattgaggctgcattcagcgtatgcacag |
118 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||| | |
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| T |
47716427 |
aagtgggtatcctgcatcagagttcttgatccaaggacaggaaatacgacctgtcttttggagcttcaggagaatgaggctgcattcagcatatgcactg |
47716328 |
T |
|
| Q |
119 |
taaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattca |
218 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||||| ||||| |
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|
| T |
47716327 |
taaattttcatgacaaggaatacggaacccttttagctgttggtacagctaagggactgcagtttacacccaaaaggagtttaactgctggattcattca |
47716228 |
T |
|
| Q |
219 |
tatatataggtttctagaggatggaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagatta |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||| |
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| T |
47716227 |
tatatataggtttctagatgatggaaggtctcttgaacttctccacaaaactcaggttgagggtgttcctctcgctctatgtcagtttcaaggaagatta |
47716128 |
T |
|
| Q |
319 |
cttgcaggaataggacctgttctcaggttttatgatttgggaaaaagacggttattaaggaagtatgagaataa |
392 |
Q |
| |
|
||||||||||| |||||||| |||||| | |||||||||||||||||||| |||||||| || | ||||||||| |
|
|
| T |
47716127 |
cttgcaggaattggacctgtactcaggctatatgatttgggaaaaagacgattattaagaaaatgtgagaataa |
47716054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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