View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_43 (Length: 360)
Name: NF16751_low_43
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_43 |
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| [»] chr1 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 41200093 - 41199752
Alignment:
| Q |
18 |
aactaaatgtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200093 |
aactaaatgtccatattgctgaaaactataaattttgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaat |
41199994 |
T |
|
| Q |
118 |
ggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaag |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41199993 |
cgtgtgatatgcatttattacgcaaaacatatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaag |
41199894 |
T |
|
| Q |
218 |
actcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattactacagtagcaagagagaaga |
317 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41199893 |
actcctaaaac-aagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattactgattactacagtagcaagagagaaga |
41199795 |
T |
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| Q |
318 |
gcttatgtgtttacctcgcgaagcaaagataatttacatttat |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41199794 |
gcttatgtgtttacctcgcgaagcaaagataatttacatttat |
41199752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 30 - 360
Target Start/End: Complemental strand, 1041769 - 1041440
Alignment:
| Q |
30 |
atattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgc |
129 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
1041769 |
atattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgc |
1041670 |
T |
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| Q |
130 |
atttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaaca |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1041669 |
atttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaac- |
1041571 |
T |
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| Q |
230 |
aagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattactacagtagcaagagagaagagcttatgtgttt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1041570 |
aagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagagcttatgtgttt |
1041471 |
T |
|
| Q |
330 |
acctcgcgaagcaaagataatttacatttat |
360 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1041470 |
acctcgcgaagcaaagataatttacatttat |
1041440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 41192834 - 41192634
Alignment:
| Q |
30 |
atattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgc |
129 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
41192834 |
atattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgc |
41192735 |
T |
|
| Q |
130 |
atttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaaca |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41192734 |
atttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaaca |
41192635 |
T |
|
| Q |
230 |
a |
230 |
Q |
| |
|
| |
|
|
| T |
41192634 |
a |
41192634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 41407504 - 41407385
Alignment:
| Q |
45 |
ataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaa |
144 |
Q |
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||||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| || ||||||||||| |
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| T |
41407504 |
ataaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaa |
41407405 |
T |
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| Q |
145 |
cagatgagaaatctaactga |
164 |
Q |
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| ||||||||||||||||| |
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| T |
41407404 |
ctaatgagaaatctaactga |
41407385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 30 - 360
Target Start/End: Complemental strand, 33323360 - 33323031
Alignment:
| Q |
30 |
atattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgc |
129 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
33323360 |
atattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgc |
33323261 |
T |
|
| Q |
130 |
atttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaaca |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33323260 |
atttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaac- |
33323162 |
T |
|
| Q |
230 |
aagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattactacagtagcaagagagaagagcttatgtgttt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33323161 |
aagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagagcttatgtgttt |
33323062 |
T |
|
| Q |
330 |
acctcgcgaagcaaagataatttacatttat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
33323061 |
acctcgcgaagcaaagataatttacatttat |
33323031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 3430 - 3549
Alignment:
| Q |
45 |
ataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaa |
144 |
Q |
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||||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| || ||||||||||| |
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| T |
3430 |
ataaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaa |
3529 |
T |
|
| Q |
145 |
cagatgagaaatctaactga |
164 |
Q |
| |
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| |||||||||||||||||| |
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| T |
3530 |
ctgatgagaaatctaactga |
3549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 23994 - 24113
Alignment:
| Q |
45 |
ataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaa |
144 |
Q |
| |
|
||||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| || ||||||||||| |
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| T |
23994 |
ataaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaa |
24093 |
T |
|
| Q |
145 |
cagatgagaaatctaactga |
164 |
Q |
| |
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| |||||||||||||||||| |
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| T |
24094 |
ctgatgagaaatctaactga |
24113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 16700352 - 16700496
Alignment:
| Q |
73 |
gttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaa |
172 |
Q |
| |
|
||||||||||||| || |||||| | |||||||||||||| | | || ||||||||||||| ||||||| |||||||| ||||||||| |||| || |
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| T |
16700352 |
gttttgcagcaagtcaaacccaaaaaatgataagaaagaataa----tatggtatgcatttattatgcaaaactgatgagaagtctaactgatattcgaa |
16700447 |
T |
|
| Q |
173 |
aacagattagtagtatcctcctgttccaacttacacattgtgaagactcc |
222 |
Q |
| |
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|||| || ||| | ||||| ||||| ||||| ||||||||| |||||||| |
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|
| T |
16700448 |
aacatatcagtcgcatcctgctgtttcaactgacacattgt-aagactcc |
16700496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 12001902 - 12001799
Alignment:
| Q |
29 |
catattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatg |
128 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| | | || ||||| |||||||||||||||| ||||| |||||| | |||||| ||| | |||||||| |
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| T |
12001902 |
catattgctggaaaccataaaatctgtcaaaccttcttcctttcagtttgcagcaaggcagttccaaaaactgat-acaaagaaataatagagtgatatg |
12001804 |
T |
|
| Q |
129 |
cattt |
133 |
Q |
| |
|
||||| |
|
|
| T |
12001803 |
cattt |
12001799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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