View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16751_low_44 (Length: 358)
Name: NF16751_low_44
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 17295812 - 17295480
Alignment:
| Q |
11 |
agaatatacctttcttacccaaattgctccttgtaggcatgatgtccttcgcaagacgccataagaagttctacacactcctgggagccggagcacttct |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
17295812 |
agaatgtacctttcttacccaaattgctccttgtaggcaagatgtccttcgcaagacgccataagaagttctgcacactactgggagccgaagcacttct |
17295713 |
T |
|
| Q |
111 |
atatgtttacctacaatgcaatacaatacaatccaatctattagtagtattttccagtactgatttttgttttatttgagctttcttacatctcaaacta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17295712 |
atatgtttacctacaatgcaatacaatacaatccaatctattagtagtattttctagtactgatttttgttttatttgagctttctcacatctcaaacta |
17295613 |
T |
|
| Q |
211 |
cacaaatgtacaaaattaaggtgtatacctgaggacttaggcttgaagtctttctttcaatgacctgatctatgttatattcactgcataattacattga |
310 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
17295612 |
cacaaatgtacaaaagtaaagtgtatacctgaggacttaggcctgaagtctttctttcaatgacctgatctatgttatattcattacataattacattga |
17295513 |
T |
|
| Q |
311 |
ctccggatctattgaaaacaaatccattcattg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
17295512 |
ctccggatctattgaaaacaaatccattcattg |
17295480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 13523016 - 13523100
Alignment:
| Q |
19 |
cctttcttacccaaattgctccttgtaggcatgatgtccttcgcaagacgccataagaagttctacacactcctgggagccggag |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
13523016 |
cctttcttacccaaattgctcctggtaggcagaatgtccttcgcaagacaccataagaaattctgcacactcctcggagccggag |
13523100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 29175836 - 29175920
Alignment:
| Q |
19 |
cctttcttacccaaattgctccttgtaggcatgatgtccttcgcaagacgccataagaagttctacacactcctgggagccggag |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||| |||| ||||||||| | |||||||| |
|
|
| T |
29175836 |
cctttcttacccaaattgctcctggtaggcaggatatccttcggaagacgccataagaaattctgcacactcctcgaagccggag |
29175920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University