View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_47 (Length: 350)
Name: NF16751_low_47
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 19770747 - 19770588
Alignment:
| Q |
10 |
attattctgagacagggcactgtgatattcacatatcttcattgattattattttttggaaattgaacaaaaataagaatgtggcagacaatgttgtaaa |
109 |
Q |
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| T |
19770747 |
attattctgagacagggcactgtgatattcacatatcttcattgattattattttctggaaattgaacaaaaataagaatgtggcagacaatgttgtaaa |
19770648 |
T |
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| Q |
110 |
ttcgtttttaattcatgtattaccacagaagataatgtattgtaccttatcaagtgacat |
169 |
Q |
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| T |
19770647 |
ttcgtttttaattcatgtattaccccagaagataatgtgttataccttatcaagtgacat |
19770588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 19770589 - 19770455
Alignment:
| Q |
197 |
atatctcataaagttcagagaattttaaagcaacagtggacatctactgcataatgacattaattcaaacctgcagaaattaagtctcatcattctttga |
296 |
Q |
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| T |
19770589 |
atatctcataaagttcagagaattttaaagcaatagtgaacatctactgcataatgacattaattcaaacctgcagaaattaagtctcatcatactttga |
19770490 |
T |
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| Q |
297 |
ttcaacacacatatgaaaccaaaatgacacagact |
331 |
Q |
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| T |
19770489 |
ttcaacacacatatgaaaccaaaatgacacagact |
19770455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 134 - 331
Target Start/End: Original strand, 53555370 - 53555557
Alignment:
| Q |
134 |
acagaagataatgtattgtaccttatcaagtgacattgcatctttcaacttggaaaaattaaaatatctcataaagttcagagaattttaaagcaacagt |
233 |
Q |
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| T |
53555370 |
acagaagataatgtattgtaccttatcaagtcacattgcatctttcaacttggcaaaattgaaatatctcataaagtttagagaattttaaagcaacagt |
53555469 |
T |
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| Q |
234 |
ggacatctactgcataatgacattaattcaaacctgcagaaattaagtctcatcattctttgattcaacacacatatgaaaccaaaatgacacagact |
331 |
Q |
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| T |
53555470 |
gg-------ctgcataatgacattaattcaaacctgcagaaattaagtctcatca---tttgattcaacacacatatgaaaccaaaatgacacagact |
53555557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 23889959 - 23889920
Alignment:
| Q |
61 |
ttttttggaaattgaacaaaaataagaatgtggcagacaa |
100 |
Q |
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| T |
23889959 |
ttttttggaaattgaacaaaaataggagtgtggcagacaa |
23889920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 28021551 - 28021512
Alignment:
| Q |
61 |
ttttttggaaattgaacaaaaataagaatgtggcagacaa |
100 |
Q |
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| T |
28021551 |
ttttttggaaattgaacaaaaataggagtgtggcagacaa |
28021512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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