View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_48 (Length: 349)
Name: NF16751_low_48
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 21902978 - 21902708
Alignment:
| Q |
1 |
acacctgaattgcgccgaattcttgtaaattttttagcaaaatctgaaccaattctctcttcaacagctggtgtagtgacctcaagtacccaggtagctg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21902978 |
acacctgaattgcgccgaattcttgtaaatttc--agcaaaatctgaaccaattctctcttcaacagccggtgtagtgacctcaagtacccaggtagctg |
21902881 |
T |
|
| Q |
101 |
gattgtagccacttggaatagggggacaccagtgattccctgcatagcagataggaaaacaaacaaaaatataatcgtaggaaagcgcacttgtattctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21902880 |
gattgtagccacttggaatagggggacaccagtgattccctgcagagcagataggaaaacaaacaaaaatataatcgtaggaaagcgcacttgtattctg |
21902781 |
T |
|
| Q |
201 |
acatttgtttcagaaaaagaaatacaaatgaagaagtaattaagagatatatagaaaaatgttgtgggagagg |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21902780 |
acatttgtttcagaaaaagaaatacaaatgaagaagtaattaagagatatatagaaaaatgttgtgggagagg |
21902708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 21902696 - 21902612
Alignment:
| Q |
261 |
gttgtgggagaggatccaaatccatgttgaactactctgatcatggatccttttagtaaaagctagaaatgccgagaataatcta |
345 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21902696 |
gttgtgggggaggatccaaatccatgtagaactactctgatcatggatccttttagtaaaagctagaaatgccgagaagaatcta |
21902612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 29778897 - 29778673
Alignment:
| Q |
1 |
acacctgaattgcgccgaattcttgtaaattttttagcaaaatctgaaccaattctctcttcaacagctggtgtagtgacctcaagtacccaggtagctg |
100 |
Q |
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|
|||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
29778897 |
acacctgaattgtgctgaattcttgtaaatttc--agcaaaatctgaaccaattctctcttcgacagcaggtgtagtgacctcaagtacccaggtagctg |
29778800 |
T |
|
| Q |
101 |
gattgtagccacttggaataggggg-acaccagtgattccctgcatagcagataggaaaacaaacaaaaatataatcgtaggaaagcgcacttgtattct |
199 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| |
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| T |
29778799 |
gattgtagccacttggaataggggggacaccagtgattccctgcagagcagataggaaaacaaccaaaagtataatcgcaggaaagcgcacttttattct |
29778700 |
T |
|
| Q |
200 |
gacatttgtttcagaaaaagaaataca |
226 |
Q |
| |
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|||||||||||||||| |||||||||| |
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| T |
29778699 |
gacatttgtttcagaataagaaataca |
29778673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 29778277 - 29778194
Alignment:
| Q |
261 |
gttgtgggagaggatccaaatccatgttgaactactctgatcatggatccttttagtaaaagctagaaatgccgagaataatct |
344 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||| ||| ||||| |
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| T |
29778277 |
gttgggggagaggatccaaatccatgtagaactactccgatcatggctccttttagtaaaatctagaaatgccgtgaagaatct |
29778194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 29778325 - 29778289
Alignment:
| Q |
237 |
taattaagagatatatagaaaaatgttgtgggagagg |
273 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
29778325 |
taattaagagatataaagaaaaatgttgtgggagagg |
29778289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 29431220 - 29431187
Alignment:
| Q |
251 |
atagaaaaatgttgtgggagaggatccaaatcca |
284 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
29431220 |
atagaaaaatgttgtgggagaggattcaaatcca |
29431187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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