View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_low_51 (Length: 344)

Name: NF16751_low_51
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_low_51
NF16751_low_51
[»] chr4 (7 HSPs)
chr4 (18-336)||(51295021-51295349)
chr4 (208-336)||(24807482-24807609)
chr4 (209-336)||(52545149-52545273)
chr4 (266-336)||(5653218-5653288)
chr4 (230-277)||(6732665-6732712)
chr4 (213-274)||(8005856-8005917)
chr4 (223-326)||(23985848-23985949)
[»] chr7 (8 HSPs)
chr7 (209-336)||(34844111-34844239)
chr7 (266-336)||(21631275-21631345)
chr7 (209-336)||(37405495-37405622)
chr7 (266-336)||(21633006-21633076)
chr7 (267-336)||(21631045-21631114)
chr7 (266-336)||(29598018-29598088)
chr7 (269-336)||(21633236-21633303)
chr7 (265-336)||(3233015-3233086)
[»] chr1 (6 HSPs)
chr1 (209-336)||(902136-902262)
chr1 (209-336)||(3284561-3284688)
chr1 (209-336)||(3282860-3282987)
chr1 (265-336)||(9310527-9310598)
chr1 (209-336)||(9312088-9312215)
chr1 (209-274)||(33773149-33773214)
[»] chr6 (9 HSPs)
chr6 (209-336)||(14618983-14619108)
chr6 (209-336)||(14611143-14611268)
chr6 (263-336)||(33869359-33869432)
chr6 (209-336)||(33866158-33866285)
chr6 (199-259)||(14620550-14620610)
chr6 (209-336)||(15868451-15868578)
chr6 (265-336)||(15866695-15866766)
chr6 (265-336)||(24544733-24544804)
chr6 (233-336)||(32080021-32080123)
[»] chr3 (3 HSPs)
chr3 (195-274)||(35244099-35244178)
chr3 (195-274)||(35243935-35244014)
chr3 (209-272)||(41874458-41874521)
[»] chr2 (5 HSPs)
chr2 (195-274)||(25302744-25302823)
chr2 (195-274)||(25306739-25306818)
chr2 (195-274)||(41602384-41602463)
chr2 (266-327)||(20957729-20957790)
chr2 (266-326)||(20957557-20957617)
[»] scaffold0251 (1 HSPs)
scaffold0251 (209-336)||(6285-6412)
[»] scaffold0006 (1 HSPs)
scaffold0006 (211-261)||(39206-39256)
[»] chr5 (3 HSPs)
chr5 (265-327)||(33689981-33690043)
chr5 (195-242)||(8080952-8080999)
chr5 (209-336)||(39787104-39787231)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 51295021 - 51295349
Alignment:
Q  18 agatcatttggtgtctaccttataacgttctacttttctagtgcgaatctgtaactttggtatacctacagaaaaagcactggattccctttcctttgtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295021 agatcatttggtgtctaccttataacgttctacttttctagtgcgaatctgtaactttggtatacctacagaaaaagcactggattccctttcctttgtg 51295120  T
Q  118 tcaatatttcagctttagggacaacagtaaccctcattgttctcgtatttatccgattattagattatagttagttagagaagcttggtta--------- 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||             
T  51295121 tcaatatttcagcttttgggacaacagtaaccctcattgttctcgtatttatccgattattagactatagttagttagagaagcttggttaagagttagt 51295220  T
Q  209 -agagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttatcaaatctagtttactctattatgagtcactatg 307  Q
     ||||||||||||||||||||||  |||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51295221 tagagttagttacacaactaaacattatatataggaacactaatgcatcatttctactaccttttatcaaatctagtttactctattatgagtcactatg 51295320  T
Q  308 gatatctcccacatgaatacacctatgct 336  Q
    |||||||||||||||||||||||||||||    
T  51295321 gatatctcccacatgaatacacctatgct 51295349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 24807482 - 24807609
Alignment:
Q  208 aagagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttatcaaatctagtttactctattatgagtcactatg 307  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||| |  ||||||||||||||||| || | |||  |||||||| |||||    
T  24807482 aagagttagttacacaactaaaatctatatataggaacactcatgtatcatttcaatcatcttttatcaaatcta-ttgattctcctatgagtctctatg 24807580  T
Q  308 gatatctcccacatgaatacacctatgct 336  Q
    ||||||||||||||||||||  |||||||    
T  24807581 gatatctcccacatgaatactactatgct 24807609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 52545273 - 52545149
Alignment:
Q  209 agagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttatcaaatctagtttactctattatgagtcactatgg 308  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||| || | ||||| ||||||  |||||     
T  52545273 agagttagttacacaactaaactctatatataggaacactcatgtatcattt-tattatcttttatc-aatcta-ttcattctataatgagtttctatga 52545177  T
Q  309 atatctcccacatgaatacacctatgct 336  Q
     |||||||||||||| ||| | ||||||    
T  52545176 gtatctcccacatgagtactcttatgct 52545149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 5653288 - 5653218
Alignment:
Q  266 atcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    ||||||||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||    
T  5653288 atcttttatcaaatctagtttactctcctatgagtcactgtgggtatctcccacatgaatacacctatgct 5653218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 6732712 - 6732665
Alignment:
Q  230 ctctatatataggaacattcatgtatcatttctactatcttttatcaa 277  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  6732712 ctctatatataggaacactcatgtatcttttctactatcttttatcaa 6732665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 8005856 - 8005917
Alignment:
Q  213 ttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttat 274  Q
    ||||||||  |||||| ||||||||||||||||| |||||||||||||| |  |||||||||    
T  8005856 ttagttacttaactaatctctatatataggaacactcatgtatcatttcaatcatcttttat 8005917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 23985848 - 23985949
Alignment:
Q  223 aactaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactatggatatctcccacat 321  Q
    |||||| ||||||||||||||||| |  |||| |||||   || ||||||||||||||||| || | |||  |||||||| |||||| ||||||||||||    
T  23985848 aactaatctctatatataggaacactattgtactcattc--accatcttttatcaaatcta-ttgattctcctatgagtctctatggttatctcccacat 23985944  T
Q  322 gaata 326  Q
    |||||    
T  23985945 gaata 23985949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 34844111 - 34844239
Alignment:
Q  209 agagttagttacacaactaaactctatatataggaacattcatgtatcatttcta-ctatcttttatcaaatctagtttactctattatgagtcactatg 307  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||    
T  34844111 agagttagttacacaactaaactctatatataggaacactcatgtatcatttcaatccatcttttatcaaatctagtttactctactatgagtcactatg 34844210  T
Q  308 gatatctcccacatgaatacacctatgct 336  Q
    | |||||||||||||||||||||||||||    
T  34844211 ggtatctcccacatgaatacacctatgct 34844239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 21631345 - 21631275
Alignment:
Q  266 atcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  21631345 atcttttatcaaatctagtttactctactatgagtcactatgggtatctcccacattaatacacctatgct 21631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 37405622 - 37405495
Alignment:
Q  209 agagttagttacacaa-ctaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactat 306  Q
    |||||||||||| ||| |||| ||||||||||||||||| |  |||| |||||   |||||||||| | ||||||||||||||||  |||||||||||||    
T  37405622 agagttagttactcaaactaatctctatatataggaacactattgtactcattc--actatcttttgttaaatctagtttactctcctatgagtcactat 37405525  T
Q  307 ggatatctcccacatgaatacacctatgct 336  Q
    || |||||||||||||||||||||||||||    
T  37405524 gggtatctcccacatgaatacacctatgct 37405495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 21633076 - 21633006
Alignment:
Q  266 atcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    |||||||||||||| ||| ||| |||| ||||||||||||||  |||||||||||||||||||||||||||    
T  21633076 atcttttatcaaatatagattattctactatgagtcactatgtgtatctcccacatgaatacacctatgct 21633006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 267 - 336
Target Start/End: Complemental strand, 21631114 - 21631045
Alignment:
Q  267 tcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    ||||||||| |||||||||||||||| ||||||||||||||  |||||||||||| |||| |||||||||    
T  21631114 tcttttatctaatctagtttactctactatgagtcactatgtgtatctcccacattaatagacctatgct 21631045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 29598088 - 29598018
Alignment:
Q  266 atcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    |||||||||||||||||||| | |||| |||||||| |||||| |||||||||||||||||| | ||||||    
T  29598088 atcttttatcaaatctagttcattctactatgagtctctatgggtatctcccacatgaatactcttatgct 29598018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 21633303 - 21633236
Alignment:
Q  269 ttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    |||||| ||||||| ||||||||| |||| |||||||||  ||||||||||||||||||| |||||||    
T  21633303 ttttatgaaatctaatttactctactatgggtcactatgagtatctcccacatgaatacatctatgct 21633236  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 3233015 - 3233086
Alignment:
Q  265 tatcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    |||||||||| |||||||||| | |||| ||| | ||  |||||||||||||||||||||||| | ||||||    
T  3233015 tatcttttattaaatctagttcattctactataaatctgtatggatatctcccacatgaatactcttatgct 3233086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 902136 - 902262
Alignment:
Q  209 agagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttatcaaatctagtttactctattatgagtcactatgg 308  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||||||||| | |||||||| | ||||||||||||||||  |||||||||||||||    
T  902136 agagttagttacacaattaaactctctatataggaacactcatgtatcatttc-attatcttttgttaaatctagtttactctcctatgagtcactatgg 902234  T
Q  309 atatctcccacatgaatacacctatgct 336  Q
     |||||||||||||||||||||||||||    
T  902235 gtatctcccacatgaatacacctatgct 902262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 3284561 - 3284688
Alignment:
Q  209 agagttagttacacaa-ctaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactat 306  Q
    |||||||||||| ||| |||| ||||||||||||||||| |  |||| |||||   |||||||||| | ||||||||||||||||  |||||||||||||    
T  3284561 agagttagttactcaaactaatctctatatataggaacactattgtactcattc--actatcttttgttaaatctagtttactctcctatgagtcactat 3284658  T
Q  307 ggatatctcccacatgaatacacctatgct 336  Q
    || |||||||||||||||||||||||||||    
T  3284659 gggtatctcccacatgaatacacctatgct 3284688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 3282860 - 3282987
Alignment:
Q  209 agagttagttacacaa-ctaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactat 306  Q
    |||||||||||| ||| |||| ||||||||||||||||| |  |||| |||||   |||||||||| | ||||||||||||||||  ||| |||||||||    
T  3282860 agagttagttactcaaactaatctctatatataggaacactattgtactcattc--actatcttttgttaaatctagtttactctcctataagtcactat 3282957  T
Q  307 ggatatctcccacatgaatacacctatgct 336  Q
    || |||||||||||||||||||||||||||    
T  3282958 gggtatctcccacatgaatacacctatgct 3282987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 9310527 - 9310598
Alignment:
Q  265 tatcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    |||||||| | ||||||| ||||||||  ||||||||||||||| |||||||||||||||||||| ||||||    
T  9310527 tatcttttgttaaatctaatttactctcctatgagtcactatgggtatctcccacatgaatacacatatgct 9310598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 9312088 - 9312215
Alignment:
Q  209 agagttagttacacaa-ctaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactat 306  Q
    |||||||||||| ||| |||| ||||||||||||||||| |  |||| |||||  |  |||||||| | ||||||||||||||||   ||||||||||||    
T  9312088 agagttagttactcaaactaatctctatatataggaacactattgtactcattcat--tatcttttgttaaatctagtttactctcccatgagtcactat 9312185  T
Q  307 ggatatctcccacatgaatacacctatgct 336  Q
    |  |||||||||||||||||||| ||||||    
T  9312186 gagtatctcccacatgaatacacatatgct 9312215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 33773149 - 33773214
Alignment:
Q  209 agagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttat 274  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |  |||||||||    
T  33773149 agagttagttacacgactaaactctatatataagaacactcatgtatcatttccatcatcttttat 33773214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 14618983 - 14619108
Alignment:
Q  209 agagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttatcaaatctagtttactctattatgagtcactatgg 308  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| || | |||  |||||||| ||||||    
T  14618983 agagttagttacacaactaaactctatatataggaacactcatgtatcatttc-attatcttttatcaaatcta-ttgattctcctatgagtctctatgg 14619080  T
Q  309 atatctcccacatgaatacacctatgct 336  Q
     ||||||||||||||||||  |||||||    
T  14619081 ttatctcccacatgaatactactatgct 14619108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 14611143 - 14611268
Alignment:
Q  209 agagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttatcaaatctagtttactctattatgagtcactatgg 308  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||||| || || | | |  |||||||| ||||||    
T  14611143 agagttagttacacaactaaactctatatataggaacactcgtgtatcatttc-attatcttttatcaaatata-ttgattatcctatgagtctctatgg 14611240  T
Q  309 atatctcccacatgaatacacctatgct 336  Q
     ||||||||||||||||||  |||||||    
T  14611241 ttatctcccacatgaatactactatgct 14611268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 33869359 - 33869432
Alignment:
Q  263 actatcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    |||||||||| | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  33869359 actatcttttgttaaatctagtttactctcctatgagtcactatggatatctcccacatgaatacacctatgct 33869432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 33866158 - 33866285
Alignment:
Q  209 agagttagttacaca-actaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactat 306  Q
    |||||||||||| || ||||| ||||||||||||||||| |  |||| |||||   |||||||||| | ||||||||||||||||  |||| ||||||||    
T  33866158 agagttagttactcagactaatctctatatataggaacactattgtactcattc--actatcttttgttaaatctagtttactctcctatgggtcactat 33866255  T
Q  307 ggatatctcccacatgaatacacctatgct 336  Q
    || |||||||||||||||||||||||||||    
T  33866256 gggtatctcccacatgaatacacctatgct 33866285  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 14620550 - 14620610
Alignment:
Q  199 agcttggttaagagttagttacacaactaaactctatatataggaacattcatgtatcatt 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  14620550 agcttggttaagagttagttacacaactaaactctatatataggaaaactcatgtatcatt 14620610  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 15868451 - 15868578
Alignment:
Q  209 agagttagttacacaa-ctaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactat 306  Q
    |||||||||||| ||| |||| ||||||||||||||||| |  |||| |||||  |  |||||||| | ||||||||||||||||  |||||||||||||    
T  15868451 agagttagttactcaaactaatctctatatataggaacactattgtactcattcat--tatcttttgttaaatctagtttactctcctatgagtcactat 15868548  T
Q  307 ggatatctcccacatgaatacacctatgct 336  Q
    || |||||||||||||||||||| ||||||    
T  15868549 gggtatctcccacatgaatacacatatgct 15868578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 15866695 - 15866766
Alignment:
Q  265 tatcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    |||||||| | ||||||||||||||||  ||||||||||||||| |||||||||||||||||||| ||||||    
T  15866695 tatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaatacacatatgct 15866766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 24544733 - 24544804
Alignment:
Q  265 tatcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacacctatgct 336  Q
    |||||||||||||||||||||||||||| |||||||  |||||  |||||||| ||||| ||| | ||||||    
T  24544733 tatcttttatcaaatctagtttactctactatgagtttctatgagtatctccctcatgagtactcttatgct 24544804  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 32080021 - 32080123
Alignment:
Q  233 tatatataggaacattcatgtatcatttctactatcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatacaccta 332  Q
    |||||||||||||| || ||||||||||| |  ||||||||||||||||| || | |||  |||||||| || | | |||||| |||||||||||  |||    
T  32080021 tatatataggaacactcgtgtatcatttcaatcatcttttatcaaatcta-ttgattctcctatgagtctctgtagttatctctcacatgaatactacta 32080119  T
Q  333 tgct 336  Q
    ||||    
T  32080120 tgct 32080123  T

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Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 35244099 - 35244178
Alignment:
Q  195 gagaagcttggttaagagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttat 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||||||    
T  35244099 gagaagcttggttaagagttagttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttat 35244178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 35244014 - 35243935
Alignment:
Q  195 gagaagcttggttaagagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttat 274  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |  |||||||||    
T  35244014 gagaagcttggttaagagttaattacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttat 35243935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 41874458 - 41874521
Alignment:
Q  209 agagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatctttt 272  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||    
T  41874458 agagttagttacacaactaaactctatatataggaacactcatgtaccatttcaattatctttt 41874521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 25302744 - 25302823
Alignment:
Q  195 gagaagcttggttaagagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttat 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |  |||||||||    
T  25302744 gagaagtttggttaagagttagttacacaactaaactctatatataggatcactcatgtatcatttcaatcatcttttat 25302823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 25306739 - 25306818
Alignment:
Q  195 gagaagcttggttaagagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttat 274  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| |  |||||||||    
T  25306739 gagaagtttggttaagagttagttacacagctaaactctatatataggaacactcatgtaacatttcaatcatcttttat 25306818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 41602384 - 41602463
Alignment:
Q  195 gagaagcttggttaagagttagttacacaactaaactctatatataggaacattcatgtatcatttctactatcttttat 274  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || | |||||||    
T  41602384 gagaagtttggttaagagttagttacataactaaattctatatataggaacactcatgtatcatttcaaccaccttttat 41602463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 20957729 - 20957790
Alignment:
Q  266 atcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatac 327  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  20957729 atcttttgtcaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 20957790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 20957557 - 20957617
Alignment:
Q  266 atcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaata 326  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  20957557 atcttttgtcaaatctagtttactctactatgagtcactatgggtatctcccacatgaata 20957617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 6285 - 6412
Alignment:
Q  209 agagttagttacacaa-ctaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactat 306  Q
    |||||||||||| ||| |||| ||||||||||||||||| |  |||| |||||   |||||||||| | ||||| ||||||||||  |||||||||||||    
T  6285 agagttagttactcaaactaatctctatatataggaacactattgtactcattc--actatcttttgttaaatcaagtttactctcctatgagtcactat 6382  T
Q  307 ggatatctcccacatgaatacacctatgct 336  Q
    || ||||||||||||||||||| |||||||    
T  6383 gggtatctcccacatgaatacatctatgct 6412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 39206 - 39256
Alignment:
Q  211 agttagttacacaactaaactctatatataggaacattcatgtatcatttc 261  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39206 agttagttacacaactaaactctatatataggaacactcatgtatcatttc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 33689981 - 33690043
Alignment:
Q  265 tatcttttatcaaatctagtttactctattatgagtcactatggatatctcccacatgaatac 327  Q
    |||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||    
T  33689981 tatcttttatcaaatctaattcactctattatgagtctctatgggtatctcccacatgaatac 33690043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 8080952 - 8080999
Alignment:
Q  195 gagaagcttggttaagagttagttacacaactaaactctatatatagg 242  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8080952 gagaagcttggttaagagttagttacacaactaaactctctatatagg 8080999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 39787231 - 39787104
Alignment:
Q  209 agagttagttacacaa-ctaaactctatatataggaacattcatgta-tcatttctactatcttttatcaaatctagtttactctattatgagtcactat 306  Q
    |||||||||||| ||| |||| ||||||||||||||||| |  | || |||||   ||| |||||| | ||||||||||||||||  ||| |||||||||    
T  39787231 agagttagttactcaaactaatctctatatataggaacactattttactcattc--actgtcttttgttaaatctagtttactctcctataagtcactat 39787134  T
Q  307 ggatatctcccacatgaatacacctatgct 336  Q
    || |||||||||||||||||||| ||||||    
T  39787133 gggtatctcccacatgaatacacatatgct 39787104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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