View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_52 (Length: 341)
Name: NF16751_low_52
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 9382986 - 9383312
Alignment:
| Q |
1 |
accaaagttaagtgaaaatattggtctatatttttgggagagttggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggccgataatcgga |
100 |
Q |
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| T |
9382986 |
accaaagttaagtgaaaatattggtccgtatttttgggagaggcggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggccgatgatcgga |
9383085 |
T |
|
| Q |
101 |
agtttgaatagaggagatggagggaggtttttgtgacggtttaaaattggctggaaaattatgtagcaaatgagtgatgaaagaaataatgtgaaggcca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9383086 |
agtttgaatagaggagatggagggaggtttttttgacggtttaaaattggctggaaaataatgtagcaaatgagtgatgaaagaaataatgtgaaggcca |
9383185 |
T |
|
| Q |
201 |
atagtagaggttccatgatatgttgctatagtatattagttgaatagtaaaattttactttgaaatatagttgaata----atatatatgattgaagcta |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
9383186 |
atagtagaggttccatgatatgttgctatagtatattagttgaattgtaaaattttactttggaatatagttgaataatatatatatatgattgaagcta |
9383285 |
T |
|
| Q |
297 |
gcgtaagaggtttaggagctaccaagg |
323 |
Q |
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| T |
9383286 |
gcgtaagaggtttaggagctaccaagg |
9383312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9400455 - 9400679
Alignment:
| Q |
1 |
accaaagttaagtgaaaatattggtctatatttttgggagagttggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggccgataatcgga |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
9400455 |
accaaagttaagtgaaaatattggtccgtatttttgggagaggcggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggccaatgatcgga |
9400554 |
T |
|
| Q |
101 |
agtttgaatagaggagatggagggaggtttttgtgacggtttaaaattggctggaaaattatgtagcaaatgagtgatgaaagaaataatgtgaaggcca |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9400555 |
agtttgaatagaggcgatggagggaggtttttgtgacggtttaaaattggctggaaaattatgtagcaaatgagtgatgaaagaaataatgtgaaggcta |
9400654 |
T |
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| Q |
201 |
atagtagaggttccatgatatgttg |
225 |
Q |
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||||||||||||||||| ||||||| |
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| T |
9400655 |
atagtagaggttccatggtatgttg |
9400679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 23243193 - 23243116
Alignment:
| Q |
59 |
tggagaaggggacctaacatgtgcatgtggccgataatcggaagtttgaatagaggagatggagggaggtttttgtga |
136 |
Q |
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||||| || |||||||| | |||||| ||||| ||||| |||||||||| |||| ||||||||||||| ||||||| |
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| T |
23243193 |
tggaggagaggacctaagaggtgcatatggccaataattggaagtttgagaggaggtgatggagggaggtatttgtga |
23243116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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