View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_53 (Length: 339)
Name: NF16751_low_53
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 25585887 - 25585571
Alignment:
| Q |
8 |
aaataattctcaattattatgagaccagctgttttttatgtacatcgatgacaactatagaagaaagtaagggatcagatgctccactaatatcagcacc |
107 |
Q |
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| T |
25585887 |
aaatatttctcaattattatgagaccagctgttttttatgtacattgcagacaactatagaagaaagtaagggatcagatgctccactaatatcagcacc |
25585788 |
T |
|
| Q |
108 |
tttgcttcttacatggagtagataattgacggctctctcagtaataacctcaccgggaatcaatacaggtatgcctggaggatatggacaaataagctcc |
207 |
Q |
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| T |
25585787 |
tttgcttcttacatggagtagataattgacggctctctcagtaataacctcaccgggaatcaatacaggtatgcctggaggatatggacaaataagctcc |
25585688 |
T |
|
| Q |
208 |
cccgaaaccttaccaatgctctcctttatcgttacttttcttttgcttgcaaaaaatgcatctctgggggtcaagcttgtgattatatcatcaaagggtg |
307 |
Q |
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| T |
25585687 |
cccgaaaccttaccaatgctctcctttatcgttacttttcttttgcttgcaaaaaatgcatctctgggggtcaagcttgtgattatatcatcaaagggtg |
25585588 |
T |
|
| Q |
308 |
tgtgttcagtaagtact |
324 |
Q |
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||||||||||||||||| |
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| T |
25585587 |
tgtgttcagtaagtact |
25585571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 57 - 324
Target Start/End: Complemental strand, 25590721 - 25590454
Alignment:
| Q |
57 |
gacaactatagaagaaagtaagggatcagatgctccactaatatcagcacctttgcttcttacatggagtagataattgacggctctctcagtaataacc |
156 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||||| |
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| T |
25590721 |
gacaactatcgaggaaagtaagggatcagatgctccactaatatcagcaccttcacttcttacatggagtagataatcgactgctttctcagtaataacc |
25590622 |
T |
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| Q |
157 |
tcaccgggaatcaatacaggtatgcctggaggatatggacaaataagctcccccgaaaccttaccaatgctctcctttatcgttacttttcttttgcttg |
256 |
Q |
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| T |
25590621 |
tcgcctgggatcaataccggtatgcctggagggtatggacatataagctcccccgaaaccttaccaatgctctctttcaccattacttttcttttacttg |
25590522 |
T |
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| Q |
257 |
caaaaaatgcatctctgggggtcaagcttgtgattatatcatcaaagggtgtgtgttcagtaagtact |
324 |
Q |
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| T |
25590521 |
caaagaatgcatctctaggtgtcaagctcatgattatatcatcaaagggtgcatgatcagtaagtact |
25590454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 57 - 324
Target Start/End: Complemental strand, 25600373 - 25600106
Alignment:
| Q |
57 |
gacaactatagaagaaagtaagggatcagatgctccactaatatcagcacctttgcttcttacatggagtagataattgacggctctctcagtaataacc |
156 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||||| |
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| T |
25600373 |
gacaactatcgaagaaagtaagggatcagatgctccactaatatcagcaccttcacttcttacatggagtagataatcgactgctttctcagtaataacc |
25600274 |
T |
|
| Q |
157 |
tcaccgggaatcaatacaggtatgcctggaggatatggacaaataagctcccccgaaaccttaccaatgctctcctttatcgttacttttcttttgcttg |
256 |
Q |
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|| || || |||||||| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||| || | | ||||||||||||| |||| |
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| T |
25600273 |
tcgcctgggatcaataccggtatgcctggagggtatggacatacaagctcccccgaaaccttaccaatgctctctttcaccattacttttcttttacttg |
25600174 |
T |
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| Q |
257 |
caaaaaatgcatctctgggggtcaagcttgtgattatatcatcaaagggtgtgtgttcagtaagtact |
324 |
Q |
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|||| ||||||||||| || |||||||| ||||||||||||||||||||| || |||||||||||| |
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| T |
25600173 |
caaagaatgcatctctaggtgtcaagctcatgattatatcatcaaagggtgcatgatcagtaagtact |
25600106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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