View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_54 (Length: 336)
Name: NF16751_low_54
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 37165486 - 37165168
Alignment:
| Q |
1 |
cattgaattgtcaagtaattaacaaatggagctaaatatttgtatttacatggtttaagtagctaaacttc-aactaaaatacgaacgcgagagtgaaaa |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37165486 |
cattgaattgtcaagtaattaacaaatggagctaaatatttgtatttacatggtttaagtagctaaacttctaactaaaatacgaacgcgagagtgaaaa |
37165387 |
T |
|
| Q |
100 |
gaaaagattaccagaaagcctctaagccgcctttgaaatttatttacattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaacagga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37165386 |
gaaaagattaccagaaagcctctaagccgcctttgaaatttatttacattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaacagga |
37165287 |
T |
|
| Q |
200 |
catatgtatgtctccaattacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattggcctttt |
299 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37165286 |
catatgtatgtctccaattacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattggcttttt |
37165187 |
T |
|
| Q |
300 |
atcttcttgactactttct |
318 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
37165186 |
atcttcttgactactttct |
37165168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 97 - 318
Target Start/End: Complemental strand, 37132938 - 37132717
Alignment:
| Q |
97 |
aaagaaaagattaccagaaagcctctaagccgcctttgaaatttatttacattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaaca |
196 |
Q |
| |
|
||||||||| || |||| || ||||| |||| | ||||||||| | | |||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
37132938 |
aaagaaaaggtttccagcaatcctctcagccacatttgaaattcagtggcattcagcacgataaacacatacactgtgtcaactatgtagttcaaaaaca |
37132839 |
T |
|
| Q |
197 |
ggacatatgtatgtctccaattacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattggcct |
296 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | |
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| T |
37132838 |
agacatatgtatgtctccaagtacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgtcacgctcaaataaattggctt |
37132739 |
T |
|
| Q |
297 |
tttatcttcttgactactttct |
318 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
37132738 |
tttatcttcttgactactttct |
37132717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 99 - 318
Target Start/End: Complemental strand, 37140022 - 37139803
Alignment:
| Q |
99 |
agaaaagattaccagaaagcctctaagccgcctttgaaatttatttacattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaacagg |
198 |
Q |
| |
|
||||||| ||||||| || ||||| |||| | ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
37140022 |
agaaaaggttaccagcaatcctctcagccacatttgaaattcaattgcattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaacaag |
37139923 |
T |
|
| Q |
199 |
acatatgtatgtctccaattacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattggccttt |
298 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||| ||| |
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|
| T |
37139922 |
acatatgcatgtctccaatttcggctaagaaacaatgatccccataggccccaaaatccagtcataaatcccaatgtcacacacaaataaattggttttt |
37139823 |
T |
|
| Q |
299 |
tatcttcttgactactttct |
318 |
Q |
| |
|
||||||||||||| |||||| |
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|
| T |
37139822 |
tatcttcttgacttctttct |
37139803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 101 - 316
Target Start/End: Original strand, 35142485 - 35142701
Alignment:
| Q |
101 |
aaaagattaccagaaagcctctaagccgcctttgaaatttatttacattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaacaggac |
200 |
Q |
| |
|
||||| ||||||| ||||||||||||| | ||||||||||| || | ||||||||||||||||||||||||||||||| ||||| |||||| |||| ||| |
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|
| T |
35142485 |
aaaaggttaccagcaagcctctaagccacttttgaaatttagttgccttcagcaccataaacacatacactgtgtcaaatatgttgttcaagaacaagac |
35142584 |
T |
|
| Q |
201 |
atatgtatgtctccaattacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattgg-cctttt |
299 |
Q |
| |
|
||||| |||||||||||| ||| |||||||| || ||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
35142585 |
atatgcatgtctccaattctggcagagaaacaaagagccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggttttttt |
35142684 |
T |
|
| Q |
300 |
atcttcttgactacttt |
316 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
35142685 |
atcttcttgactacttt |
35142701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 318
Target Start/End: Complemental strand, 38749464 - 38749374
Alignment:
| Q |
229 |
aacaatgatcccc-ataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattggccttttatcttcttgactactttct |
318 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
38749464 |
aacaatgatcccccatagtccccaaaatcctgtgataaatcccgatgccacactcaaataaattggttttttatcttctggactactttct |
38749374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 37133034 - 37132986
Alignment:
| Q |
11 |
tcaagtaattaacaaatggagctaaatatttgtatttacatggtttaagt |
60 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
37133034 |
tcaagtaattaacaaatggagctgtatatttgtattt-catggtttaagt |
37132986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 95 - 319
Target Start/End: Original strand, 3022200 - 3022424
Alignment:
| Q |
95 |
gaaaagaaaagattaccagaaagcctctaagccgcctttgaaatttatttacattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaa |
194 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||| |||| ||| || |||||||||||||||||||||||| |||||||||||||| || ||| || |
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|
| T |
3022200 |
gaaaagaaaagtttaccaacaagcctctaagccatcttcgaaacttagttgcattcagcaccataaacacatacattgtgtcaattatgttgtccaagaa |
3022299 |
T |
|
| Q |
195 |
caggacatatgtatgtctccaattacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattggc |
294 |
Q |
| |
|
|| |||||||| |||||||||| | | || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3022300 |
caagacatatgcatgtctccaagtcttccacagcagaaatgatccccatagtccccaaaatcctgtgataaatcccaatgccacactcaaataaattggt |
3022399 |
T |
|
| Q |
295 |
cttttatcttcttgactactttctg |
319 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
3022400 |
tttttatcttctggactactttctg |
3022424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 11242361 - 11242471
Alignment:
| Q |
208 |
tgtctccaattacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattggccttttatcttctt |
307 |
Q |
| |
|
||||||||||| ||| ||| | |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||| |
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|
| T |
11242361 |
tgtctccaattccggataaacagcaatgatccccaaaggccccaaaatcctgtaataaatcctaatgccacactcaaataaattgaattcatatcttctg |
11242460 |
T |
|
| Q |
308 |
gactactttct |
318 |
Q |
| |
|
||||||||||| |
|
|
| T |
11242461 |
gactactttct |
11242471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 29723430 - 29723485
Alignment:
| Q |
16 |
taattaacaaatggagctaaatatttgtatttacatggtttaagtagctaaacttc |
71 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
29723430 |
taattaacaaacggagctatatatttgtattttcatggtttaagcagctaaacttc |
29723485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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